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Protein
Submitted name:

Major capsid protein VP60

Gene

VP60

Organism
Rabbit hemorrhagic disease virus (RHDV)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Major capsid protein VP60Imported
Gene namesi
Name:VP60Imported
OrganismiRabbit hemorrhagic disease virus (RHDV)Imported
Taxonomic identifieri11976 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeLagovirus
Virus hostiOryctolagus cuniculus (Rabbit) [TaxID: 9986]

Family & Domainsi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR004005. Calicivirus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00915. Calici_coat. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3HNQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEGKTRTAPQ GEAAGTATTA SVPGTTTDGM DPGVVAATSV VTAENSSASV
60 70 80 90 100
ATAGIGGPPQ QVDQQETWRT NFYYNDVFTW SVADAPGSIL YTVQHSPQNN
110 120 130 140 150
PFTAVLSQMY AGWAGGMQFR FIVAGSGVFG GRLVAAVIPP GIEIGPGLEV
160 170 180 190 200
RQFPHVVIDA RSLEPVTITM PDLRPNMYHP TGDPGLVPTL VLSVYNNLIN
210 220 230 240 250
PFGGSTNAIQ VTVETRPSDD FEFVMIRAPS SKTVDSISPA GLLTTPVLTG
260 270 280 290 300
VGNDNRWNGQ IVGLQPVPGG FSTCNRHWNL NGSTYGWSSP RFADIDHRRG
310 320 330 340 350
SASYSGNSST NVLQFWYANA GSAIDNPISQ VAPDGFPDMS FVPFNSPNIP
360 370 380 390 400
TAGWVGFGGI WNSNNGAPAA TTVQAYELGF ATGAPNNLQP TTNTSGAQTV
410 420 430 440 450
AKSIYAVVTG TNQNPTGLFV MASGVISTPN ASAVTYTPQP DRIVTTPGTP
460 470 480 490 500
AAAPVGKNTP IMFASVVRRT GDVNAAAGST NGTQYGTGSQ PLPVTIGLSL
510 520 530 540 550
NNYSSALMPG QFFVWQLTFA SGFMEIGLSV DGYFYAGTGA STTLIDLTEL
560 570
IDVRPVGPRP SKSTLVFNLG GTTNGFSYV
Length:579
Mass (Da):60,408
Last modified:November 8, 2005 - v1
Checksum:iC64649505B3B3089
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ205345 mRNA. Translation: ABA46867.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ205345 mRNA. Translation: ABA46867.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR004005. Calicivirus_coat.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00915. Calici_coat. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Sequencing and analyzing the complete nucleotide sequence of Rabbit haemorrhagic disease virus JX/CHA/97 strain isolated from China."
    Liu G., Ni Z., Zhang Y., Yun T.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JX/CHA/97Imported.

Entry informationi

Entry nameiQ3HNQ1_RHDV
AccessioniPrimary (citable) accession number: Q3HNQ1
Entry historyi
Integrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: October 1, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.