Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q3EAR7 (GLYT2_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable glycosyltransferase At3g42180
EC=2.4.-.-
Gene names
Ordered Locus Names:At3g42180
ORF Names:T27B3.50
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length470 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May be involved in cell wall biosynthesis.

Subcellular location

Golgi apparatus membrane; Single-pass type II membrane protein By similarity.

Disruption phenotype

No visible phenotype. Ref.5

Sequence similarities

Belongs to the glycosyltransferase 47 family.

Sequence caution

The sequence CAB68119.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Biological processCell wall biogenesis/degradation
   Cellular componentGolgi apparatus
Membrane
   Coding sequence diversityAlternative splicing
   DomainSignal-anchor
Transmembrane
Transmembrane helix
   Molecular functionGlycosyltransferase
Transferase
   PTMGlycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processcellular cell wall organization

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentGolgi membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

integral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functiontransferase activity, transferring glycosyl groups

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 1 isoform produced by alternative splicing. [Select]

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q3EAR7-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 470470Probable glycosyltransferase At3g42180
PRO_0000392293

Regions

Topological domain1 – 77Cytoplasmic Potential
Transmembrane8 – 2821Helical; Signal-anchor for type II membrane protein; Potential
Topological domain29 – 470442Lumenal Potential
Compositional bias28 – 6740Ser-rich

Amino acid modifications

Glycosylation1001N-linked (GlcNAc...) Potential
Glycosylation2351N-linked (GlcNAc...) Potential
Glycosylation2731N-linked (GlcNAc...) Potential
Glycosylation3071N-linked (GlcNAc...) Potential
Glycosylation3881N-linked (GlcNAc...) Potential

Experimental info

Sequence conflict71K → R in BX824909. Ref.3
Sequence conflict1751G → C in BX824909. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified January 15, 2008. Version 2.
Checksum: 43378976271A99A4

FASTA47054,268
        10         20         30         40         50         60 
MSNNSSKSFC LLGFPLILIL LLSFLLFSSF PNNESPPQQF FSSLTMSSLL VHTNALQSSS 

        70         80         90        100        110        120 
SSSSLYSPPI TVKRRSNLEK REEELRKARA AIRRAVRFKN CTSNEEVITY IPTGQIYRNS 

       130        140        150        160        170        180 
FAFHQSHIEM MKTFKVWSYK EGEQPLVHDG PVNDIYGIEG QFIDELSYVM GGPSGRFRAS 

       190        200        210        220        230        240 
RPEEAHAFFL PFSVANIVHY VYQPITSPAD FNRARLHRIF NDYVDVVAHK HPFWNQSNGA 

       250        260        270        280        290        300 
DHFMVSCHDW APDVPDSKPE FFKNFMRGLC NANTSEGFRR NIDFSIPEIN IPKRKLKPPF 

       310        320        330        340        350        360 
MGQNPENRTI LAFFAGRAHG YIREVLFSHW KGKDKDVQVY DHLTKGQNYH ELIGHSKFCL 

       370        380        390        400        410        420 
CPSGYEVASP REVEAIYSGC VPVVISDNYS LPFNDVLDWS KFSVEIPVDK IPDIKKILQE 

       430        440        450        460        470 
IPHDKYLRMY RNVMKVRRHF VVNRPAQPFD VIHMILHSVW LRRLNIRLPS

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed: 11130713] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Whole genome sequence comparisons and 'full-length' cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation."
Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M., Weissenbach J., Salanoubat M.
Genome Res. 14:406-413(2004) [PubMed: 14993207] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 4-470.
Strain: cv. Columbia.
[4]"Arabidopsis ORF clones."
Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 46-470.
[5]"Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis."
Jensen J.K., Sorensen S.O., Harholt J., Geshi N., Sakuragi Y., Moller I., Zandleven J., Bernal A.J., Jensen N.B., Sorensen C., Pauly M., Beldman G., Willats W.G., Scheller H.V.
Plant Cell 20:1289-1302(2008) [PubMed: 18460606] [Abstract]
Cited for: DISRUPTION PHENOTYPE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AL137079 Genomic DNA. Translation: CAB68119.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE77729.1.
BX824909 mRNA. No translation available.
BT026120 mRNA. Translation: ABG48476.1.
IPIIPI00538548.
PIRT46112.
RefSeqNP_189804.4. NM_114085.4.
UniGeneAt.36512.

3D structure databases

ProteinModelPortalQ3EAR7.
ModBaseSearch...

Protein family/group databases

CAZyGT47. Glycosyltransferase Family 47.

Proteomic databases

PRIDEQ3EAR7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G42180.1; AT3G42180.1; AT3G42180.
GeneID823191.
GenomeReviewsGene locus AT3G42180 in contig BA000014_GR.
KEGGath:AT3G42180.
NMPDRfig|3702.1.peg.15446.

Organism-specific databases

TAIRAt3g42180.

Phylogenomic databases

GeneTreeEPGT00070000028243.
InParanoidQ3EAR7.
PhylomeDBQ3EAR7.
ProtClustDBCLSN2920273.

Gene expression databases

GenevestigatorQ3EAR7.

Family and domain databases

InterProIPR004263. Exostosin.
[Graphical view]
PfamPF03016. Exostosin. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameGLYT2_ARATH
AccessionPrimary (citable) accession number: Q3EAR7
Secondary accession number(s): Q147H3, Q9M2N4
Entry history
Integrated into UniProtKB/Swiss-Prot: March 23, 2010
Last sequence update: January 15, 2008
Last modified: December 14, 2011
This is version 41 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents