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Protein

Probable peptide/nitrate transporter At3g43790

Gene

ZIFL2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • response to nematode Source: TAIR
  • transmembrane transport Source: GO_Central
Complete GO annotation...

Keywords - Biological processi

Transport

Protein family/group databases

TCDBi2.A.1.2.96. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
Probable peptide/nitrate transporter At3g43790
Alternative name(s):
Protein ZINC INDUCED FACILITATOR-LIKE 2
Gene namesi
Name:ZIFL2
Ordered Locus Names:At3g43790
ORF Names:T28A8.80
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G43790.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei39 – 5921HelicalSequence analysisAdd
BLAST
Transmembranei76 – 9621HelicalSequence analysisAdd
BLAST
Transmembranei107 – 12721HelicalSequence analysisAdd
BLAST
Transmembranei129 – 14921HelicalSequence analysisAdd
BLAST
Transmembranei168 – 18821HelicalSequence analysisAdd
BLAST
Transmembranei210 – 23021HelicalSequence analysisAdd
BLAST
Transmembranei278 – 29821HelicalSequence analysisAdd
BLAST
Transmembranei318 – 33821HelicalSequence analysisAdd
BLAST
Transmembranei355 – 37521HelicalSequence analysisAdd
BLAST
Transmembranei381 – 40121HelicalSequence analysisAdd
BLAST
Transmembranei416 – 43621HelicalSequence analysisAdd
BLAST
Transmembranei460 – 48021HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Disruption phenotypei

No visible phenotype.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 484484Probable peptide/nitrate transporter At3g43790PRO_0000399970Add
BLAST

Proteomic databases

PaxDbiQ3EAQ5.
PRIDEiQ3EAQ5.

Expressioni

Gene expression databases

GenevisibleiQ3EAQ5. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G43790.2.

Structurei

3D structure databases

ProteinModelPortaliQ3EAQ5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG2615. Eukaryota.
ENOG410XSE0. LUCA.
HOGENOMiHOG000242165.
InParanoidiQ3EAQ5.
OMAiCRIAQGR.
PhylomeDBiQ3EAQ5.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q3EAQ5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MADDESRTIL LEKNEDCPGC IIDRTKQQQR GVPYLHLSFI WLVSLCTALP
60 70 80 90 100
ISSLFPYIYF MIRDFHIAKQ EEDIGFYAGF VGSSFMIGRA LTSIFWGKLA
110 120 130 140 150
DRYGRKPIIL IGTFSVIIFN TLFGLSTSFW LAISVRFLLG CFNCLLGVIR
160 170 180 190 200
AYASEVVSEE YNALSLSVVS TSRGIGLILG PAIGGYLAQP AEKYPNIFSQ
210 220 230 240 250
SSVFGRFPYF LPSLVISVYA TAVLIACWWL PETLHTRCRI AQGRLNPTEL
260 270 280 290 300
NDDESRGGGL DEQKIINKPS LLRNRPLMAI IIVYCVFSLQ EIAYNEIFSL
310 320 330 340 350
WAVSDRSYGG LSFSSQDVGE VLAISGLGLL VFQLLVYPPL EKSVGLLAVI
360 370 380 390 400
RLSAVLLIPL LSCYPYIALL SGVTLHLVIN CASIIKNALS ISLVTGLFIM
410 420 430 440 450
LNKAVPQNQR GAANGISMTA MSVFKSFGPA GGGVLFSWAQ KRQDATFLPG
460 470 480
QIFAPCDEMV FLVLNLVQLV GLILTFIPYI SQIQ
Note: Derived from EST data. No experimental confirmation available.
Length:484
Mass (Da):53,275
Last modified:November 2, 2010 - v2
Checksum:i6C9F72151798543D
GO
Isoform 2 (identifier: Q3EAQ5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     451-456: Missing.

Note: No experimental confirmation available.
Show »
Length:478
Mass (Da):52,615
Checksum:i4068202FBE702886
GO

Sequence cautioni

The sequence CAB83151.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei451 – 4566Missing in isoform 2. 1 PublicationVSP_039950

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162691 Genomic DNA. Translation: CAB83151.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE77827.1.
CP002686 Genomic DNA. Translation: AEE77828.1.
CP002686 Genomic DNA. Translation: AEE77829.1.
BT030378 mRNA. Translation: ABO38791.1.
PIRiT47415.
RefSeqiNP_189965.2. NM_114247.3. [Q3EAQ5-2]
NP_974382.1. NM_202653.1. [Q3EAQ5-1]
NP_974383.1. NM_202654.1. [Q3EAQ5-1]
UniGeneiAt.36230.

Genome annotation databases

EnsemblPlantsiAT3G43790.2; AT3G43790.2; AT3G43790. [Q3EAQ5-1]
AT3G43790.3; AT3G43790.3; AT3G43790. [Q3EAQ5-1]
GeneIDi823490.
KEGGiath:AT3G43790.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162691 Genomic DNA. Translation: CAB83151.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE77827.1.
CP002686 Genomic DNA. Translation: AEE77828.1.
CP002686 Genomic DNA. Translation: AEE77829.1.
BT030378 mRNA. Translation: ABO38791.1.
PIRiT47415.
RefSeqiNP_189965.2. NM_114247.3. [Q3EAQ5-2]
NP_974382.1. NM_202653.1. [Q3EAQ5-1]
NP_974383.1. NM_202654.1. [Q3EAQ5-1]
UniGeneiAt.36230.

3D structure databases

ProteinModelPortaliQ3EAQ5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G43790.2.

Protein family/group databases

TCDBi2.A.1.2.96. the major facilitator superfamily (mfs).

Proteomic databases

PaxDbiQ3EAQ5.
PRIDEiQ3EAQ5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G43790.2; AT3G43790.2; AT3G43790. [Q3EAQ5-1]
AT3G43790.3; AT3G43790.3; AT3G43790. [Q3EAQ5-1]
GeneIDi823490.
KEGGiath:AT3G43790.

Organism-specific databases

TAIRiAT3G43790.

Phylogenomic databases

eggNOGiKOG2615. Eukaryota.
ENOG410XSE0. LUCA.
HOGENOMiHOG000242165.
InParanoidiQ3EAQ5.
OMAiCRIAQGR.
PhylomeDBiQ3EAQ5.

Miscellaneous databases

PROiQ3EAQ5.

Gene expression databases

GenevisibleiQ3EAQ5. AT.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis ORF clones."
    Bautista V.R., Kim C.J., Chen H., Wu S.Y., De Los Reyes C., Ecker J.R.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: cv. Columbia.
  4. "A novel major facilitator superfamily protein at the tonoplast influences zinc tolerance and accumulation in Arabidopsis."
    Haydon M.J., Cobbett C.S.
    Plant Physiol. 143:1705-1719(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: DISRUPTION PHENOTYPE.
  5. "The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance."
    Li J.Y., Fu Y.L., Pike S.M., Bao J., Tian W., Zhang Y., Chen C.Z., Zhang Y., Li H.M., Huang J., Li L.G., Schroeder J.I., Gassmann W., Gong J.M.
    Plant Cell 22:1633-1646(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPTR36_ARATH
AccessioniPrimary (citable) accession number: Q3EAQ5
Secondary accession number(s): Q9LZG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 2, 2010
Last sequence update: November 2, 2010
Last modified: March 16, 2016
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.