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Protein

Pentatricopeptide repeat-containing protein At5g18475

Gene

At5g18475

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g18475
Gene namesi
Ordered Locus Names:At5g18475
ORF Names:F20L16.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G18475
TAIRilocus:1006230454 AT5G18475

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003635291 – 506Pentatricopeptide repeat-containing protein At5g18475Add BLAST506

Proteomic databases

PaxDbiQ3E9F0
PRIDEiQ3E9F0

Expressioni

Gene expression databases

ExpressionAtlasiQ3E9F0 baseline and differential
GenevisibleiQ3E9F0 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G18475.1

Structurei

3D structure databases

ProteinModelPortaliQ3E9F0
SMRiQ3E9F0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati88 – 122PPR 1Add BLAST35
Repeati123 – 158PPR 2Add BLAST36
Repeati159 – 194PPR 3Add BLAST36
Repeati195 – 229PPR 4Add BLAST35
Repeati231 – 266PPR 5Add BLAST36
Repeati267 – 301PPR 6Add BLAST35
Repeati302 – 336PPR 7Add BLAST35
Repeati337 – 371PPR 8Add BLAST35
Repeati372 – 406PPR 9Add BLAST35
Repeati407 – 441PPR 10Add BLAST35
Repeati442 – 476PPR 11Add BLAST35
Repeati477 – 506PPR 12Add BLAST30

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi15 – 20Poly-Ser6

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000239063
InParanoidiQ3E9F0
OMAiVMNCLCS
OrthoDBiEOG0936082J
PhylomeDBiQ3E9F0

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 3 hits
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Q3E9F0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFTTSIINE HRRFSSSSRS WVSPICFSEK KKKPSPPPES SISPVETNPK
60 70 80 90 100
TKFISHESAV SLMKRERDPQ GVLDIFNKAS QQKGFNHNNA TYSVLLDNLV
110 120 130 140 150
RHKKFLAVDA ILHQMKYETC RFQESLFLNL MRHFSRSDLH DKVMEMFNLI
160 170 180 190 200
QVIARVKPSL NAISTCLNLL IDSGEVNLSR KLLLYAKHNL GLQPNTCIFN
210 220 230 240 250
ILVKHHCKNG DINFAFLVVE EMKRSGISYP NSITYSTLMD CLFAHSRSKE
260 270 280 290 300
AVELFEDMIS KEGISPDPVT FNVMINGFCR AGEVERAKKI LDFMKKNGCN
310 320 330 340 350
PNVYNYSALM NGFCKVGKIQ EAKQTFDEVK KTGLKLDTVG YTTLMNCFCR
360 370 380 390 400
NGETDEAMKL LGEMKASRCR ADTLTYNVIL RGLSSEGRSE EALQMLDQWG
410 420 430 440 450
SEGVHLNKGS YRIILNALCC NGELEKAVKF LSVMSERGIW PHHATWNELV
460 470 480 490 500
VRLCESGYTE IGVRVLIGFL RIGLIPGPKS WGAVVESICK ERKLVHVFEL

LDSLVS
Length:506
Mass (Da):57,288
Last modified:November 8, 2005 - v1
Checksum:iBF9C1FC800E2044D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069328 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92568.1
AK228588 mRNA Translation: BAF00503.1
RefSeqiNP_974803.1, NM_203074.4
UniGeneiAt.19705
At.63152

Genome annotation databases

EnsemblPlantsiAT5G18475.1; AT5G18475.1; AT5G18475
GeneIDi2745987
GrameneiAT5G18475.1; AT5G18475.1; AT5G18475
KEGGiath:AT5G18475

Similar proteinsi

Entry informationi

Entry nameiPP392_ARATH
AccessioniPrimary (citable) accession number: Q3E9F0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: November 8, 2005
Last modified: April 25, 2018
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health