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Protein

Pentatricopeptide repeat-containing protein At5g18475

Gene

At5g18475

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g18475
Gene namesi
Ordered Locus Names:At5g18475
ORF Names:F20L16.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G18475.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003635291 – 506Pentatricopeptide repeat-containing protein At5g18475Add BLAST506

Proteomic databases

PaxDbiQ3E9F0.
PRIDEiQ3E9F0.

Expressioni

Gene expression databases

GenevisibleiQ3E9F0. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G18475.1.

Structurei

3D structure databases

ProteinModelPortaliQ3E9F0.
SMRiQ3E9F0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati88 – 122PPR 1Add BLAST35
Repeati123 – 158PPR 2Add BLAST36
Repeati159 – 194PPR 3Add BLAST36
Repeati195 – 229PPR 4Add BLAST35
Repeati231 – 266PPR 5Add BLAST36
Repeati267 – 301PPR 6Add BLAST35
Repeati302 – 336PPR 7Add BLAST35
Repeati337 – 371PPR 8Add BLAST35
Repeati372 – 406PPR 9Add BLAST35
Repeati407 – 441PPR 10Add BLAST35
Repeati442 – 476PPR 11Add BLAST35
Repeati477 – 506PPR 12Add BLAST30

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi15 – 20Poly-Ser6

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 12 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000239063.
InParanoidiQ3E9F0.
OMAiNILIKHY.
OrthoDBiEOG0936082J.
PhylomeDBiQ3E9F0.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 1 hit.
PF13041. PPR_2. 3 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3E9F0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFTTSIINE HRRFSSSSRS WVSPICFSEK KKKPSPPPES SISPVETNPK
60 70 80 90 100
TKFISHESAV SLMKRERDPQ GVLDIFNKAS QQKGFNHNNA TYSVLLDNLV
110 120 130 140 150
RHKKFLAVDA ILHQMKYETC RFQESLFLNL MRHFSRSDLH DKVMEMFNLI
160 170 180 190 200
QVIARVKPSL NAISTCLNLL IDSGEVNLSR KLLLYAKHNL GLQPNTCIFN
210 220 230 240 250
ILVKHHCKNG DINFAFLVVE EMKRSGISYP NSITYSTLMD CLFAHSRSKE
260 270 280 290 300
AVELFEDMIS KEGISPDPVT FNVMINGFCR AGEVERAKKI LDFMKKNGCN
310 320 330 340 350
PNVYNYSALM NGFCKVGKIQ EAKQTFDEVK KTGLKLDTVG YTTLMNCFCR
360 370 380 390 400
NGETDEAMKL LGEMKASRCR ADTLTYNVIL RGLSSEGRSE EALQMLDQWG
410 420 430 440 450
SEGVHLNKGS YRIILNALCC NGELEKAVKF LSVMSERGIW PHHATWNELV
460 470 480 490 500
VRLCESGYTE IGVRVLIGFL RIGLIPGPKS WGAVVESICK ERKLVHVFEL

LDSLVS
Length:506
Mass (Da):57,288
Last modified:November 8, 2005 - v1
Checksum:iBF9C1FC800E2044D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069328 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED92568.1.
AK228588 mRNA. Translation: BAF00503.1.
RefSeqiNP_974803.1. NM_203074.4.
UniGeneiAt.19705.
At.63152.

Genome annotation databases

EnsemblPlantsiAT5G18475.1; AT5G18475.1; AT5G18475.
GeneIDi2745987.
GrameneiAT5G18475.1; AT5G18475.1; AT5G18475.
KEGGiath:AT5G18475.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069328 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED92568.1.
AK228588 mRNA. Translation: BAF00503.1.
RefSeqiNP_974803.1. NM_203074.4.
UniGeneiAt.19705.
At.63152.

3D structure databases

ProteinModelPortaliQ3E9F0.
SMRiQ3E9F0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G18475.1.

Proteomic databases

PaxDbiQ3E9F0.
PRIDEiQ3E9F0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G18475.1; AT5G18475.1; AT5G18475.
GeneIDi2745987.
GrameneiAT5G18475.1; AT5G18475.1; AT5G18475.
KEGGiath:AT5G18475.

Organism-specific databases

TAIRiAT5G18475.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000239063.
InParanoidiQ3E9F0.
OMAiNILIKHY.
OrthoDBiEOG0936082J.
PhylomeDBiQ3E9F0.

Miscellaneous databases

PROiQ3E9F0.

Gene expression databases

GenevisibleiQ3E9F0. AT.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 1 hit.
PF13041. PPR_2. 3 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP392_ARATH
AccessioniPrimary (citable) accession number: Q3E9F0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: November 8, 2005
Last modified: November 30, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.