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Q3E7X9

- RS28A_YEAST

UniProt

Q3E7X9 - RS28A_YEAST

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Protein

40S ribosomal protein S28-A

Gene

RPS28A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: SGD

GO - Biological processi

  1. cytoplasmic translation Source: SGD
  2. positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Source: SGD
  3. rRNA export from nucleus Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciYEAST:G3O-33683-MONOMER.
ReactomeiREACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S28-A
Alternative name(s):
S33
YS27
Gene namesi
Name:RPS28A
Synonyms:RPS33, RPS33A
Ordered Locus Names:YOR167C
ORF Names:O3600
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XV

Organism-specific databases

CYGDiYOR167c.
SGDiS000005693. RPS28A.

Subcellular locationi

Cytoplasm 1 Publication

GO - Cellular componenti

  1. cytosolic small ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 676740S ribosomal protein S28-APRO_0000136842Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine2 Publications

Post-translational modificationi

N-terminally acetylated by acetyltransferase NatB.2 Publications

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ3E7X9.
PaxDbiQ3E7X9.
PRIDEiQ3E7X9.

Expressioni

Gene expression databases

GenevestigatoriQ3E7X9.

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi34563. 40 interactions.
DIPiDIP-29384N.
IntActiQ3E7X9. 1 interaction.
MINTiMINT-390375.

Structurei

Secondary structure

1
67
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi8 – 2215
Beta strandi25 – 3511
Beta strandi39 – 435
Beta strandi53 – 608

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VW9electron microscopy6.10d1-67[»]
1VWVelectron microscopy6.10d1-67[»]
1VXWelectron microscopy6.20c1-67[»]
1VXZelectron microscopy6.30c1-67[»]
3IZBelectron microscopy-Y1-67[»]
3O2ZX-ray4.00R1-67[»]
3O30X-ray4.00R1-67[»]
3U5CX-ray3.00c1-67[»]
3U5GX-ray3.00c1-67[»]
4BYLelectron microscopy4.3021-67[»]
4BYTelectron microscopy6.6021-67[»]
4CUYelectron microscopy3.70c5-67[»]
ProteinModelPortaliQ3E7X9.
SMRiQ3E7X9. Positions 5-67.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S28e family.Curated

Phylogenomic databases

eggNOGiCOG2053.
GeneTreeiENSGT00390000003580.
HOGENOMiHOG000224552.
InParanoidiQ3E7X9.
KOiK02979.
OMAiPVRTNDI.
OrthoDBiEOG7NCVH3.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e.
InterProiIPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view]
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiPF01200. Ribosomal_S28e. 1 hit.
[Graphical view]
ProDomiPD005541. Ribosomal_S28e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3E7X9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDNKTPVTLA KVIKVLGRTG SRGGVTQVRV EFLEDTSRTI VRNVKGPVRE
60
NDILVLMESE REARRLR
Length:67
Mass (Da):7,592
Last modified:November 8, 2005 - v1
Checksum:iBA145824DEE8A641
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X00128 Genomic DNA. Translation: CAA24958.1.
U55021 Genomic DNA. Translation: AAB47414.1.
Z75075 Genomic DNA. Translation: CAA99373.1.
AY692746 Genomic DNA. Translation: AAT92765.1.
BK006948 Genomic DNA. Translation: DAA10941.1.
PIRiA02750. R3BY33.
RefSeqiNP_014810.1. NM_001183586.1.

Genome annotation databases

EnsemblFungiiYOR167C; YOR167C; YOR167C.
GeneIDi854338.
KEGGisce:YOR167C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X00128 Genomic DNA. Translation: CAA24958.1 .
U55021 Genomic DNA. Translation: AAB47414.1 .
Z75075 Genomic DNA. Translation: CAA99373.1 .
AY692746 Genomic DNA. Translation: AAT92765.1 .
BK006948 Genomic DNA. Translation: DAA10941.1 .
PIRi A02750. R3BY33.
RefSeqi NP_014810.1. NM_001183586.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VW9 electron microscopy 6.10 d 1-67 [» ]
1VWV electron microscopy 6.10 d 1-67 [» ]
1VXW electron microscopy 6.20 c 1-67 [» ]
1VXZ electron microscopy 6.30 c 1-67 [» ]
3IZB electron microscopy - Y 1-67 [» ]
3O2Z X-ray 4.00 R 1-67 [» ]
3O30 X-ray 4.00 R 1-67 [» ]
3U5C X-ray 3.00 c 1-67 [» ]
3U5G X-ray 3.00 c 1-67 [» ]
4BYL electron microscopy 4.30 2 1-67 [» ]
4BYT electron microscopy 6.60 2 1-67 [» ]
4CUY electron microscopy 3.70 c 5-67 [» ]
ProteinModelPortali Q3E7X9.
SMRi Q3E7X9. Positions 5-67.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 34563. 40 interactions.
DIPi DIP-29384N.
IntActi Q3E7X9. 1 interaction.
MINTi MINT-390375.

Proteomic databases

MaxQBi Q3E7X9.
PaxDbi Q3E7X9.
PRIDEi Q3E7X9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YOR167C ; YOR167C ; YOR167C .
GeneIDi 854338.
KEGGi sce:YOR167C.

Organism-specific databases

CYGDi YOR167c.
SGDi S000005693. RPS28A.

Phylogenomic databases

eggNOGi COG2053.
GeneTreei ENSGT00390000003580.
HOGENOMi HOG000224552.
InParanoidi Q3E7X9.
KOi K02979.
OMAi PVRTNDI.
OrthoDBi EOG7NCVH3.

Enzyme and pathway databases

BioCyci YEAST:G3O-33683-MONOMER.
Reactomei REACT_188965. SRP-dependent cotranslational protein targeting to membrane.
REACT_189050. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_189183. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_217188. Formation of a pool of free 40S subunits.

Miscellaneous databases

NextBioi 976408.

Gene expression databases

Genevestigatori Q3E7X9.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
HAMAPi MF_00292. Ribosomal_S28e.
InterProi IPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view ]
PANTHERi PTHR10769. PTHR10769. 1 hit.
Pfami PF01200. Ribosomal_S28e. 1 hit.
[Graphical view ]
ProDomi PD005541. Ribosomal_S28e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Analysis of a 22,956 bp region on the right arm of Saccharomyces cerevisiae chromosome XV."
    Madania A., Poch O., Tarassov I.A., Winsor B., Martin R.P.
    Yeast 12:1563-1573(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: S288c / FY1678.
  3. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XV."
    Dujon B., Albermann K., Aldea M., Alexandraki D., Ansorge W., Arino J., Benes V., Bohn C., Bolotin-Fukuhara M., Bordonne R., Boyer J., Camasses A., Casamayor A., Casas C., Cheret G., Cziepluch C., Daignan-Fornier B., Dang V.-D.
    , de Haan M., Delius H., Durand P., Fairhead C., Feldmann H., Gaillon L., Galisson F., Gamo F.-J., Gancedo C., Goffeau A., Goulding S.E., Grivell L.A., Habbig B., Hand N.J., Hani J., Hattenhorst U., Hebling U., Hernando Y., Herrero E., Heumann K., Hiesel R., Hilger F., Hofmann B., Hollenberg C.P., Hughes B., Jauniaux J.-C., Kalogeropoulos A., Katsoulou C., Kordes E., Lafuente M.J., Landt O., Louis E.J., Maarse A.C., Madania A., Mannhaupt G., Marck C., Martin R.P., Mewes H.-W., Michaux G., Paces V., Parle-McDermott A.G., Pearson B.M., Perrin A., Pettersson B., Poch O., Pohl T.M., Poirey R., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rechmann S., Schwager C., Schweizer M., Sor F., Sterky F., Tarassov I.A., Teodoru C., Tettelin H., Thierry A., Tobiasch E., Tzermia M., Uhlen M., Unseld M., Valens M., Vandenbol M., Vetter I., Vlcek C., Voet M., Volckaert G., Voss H., Wambutt R., Wedler H., Wiemann S., Winsor B., Wolfe K.H., Zollner A., Zumstein E., Kleine K.
    Nature 387:98-102(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  5. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  6. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
    Planta R.J., Mager W.H.
    Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE, SUBUNIT.
  7. "The action of N-terminal acetyltransferases on yeast ribosomal proteins."
    Arnold R.J., Polevoda B., Reilly J.P., Sherman F.
    J. Biol. Chem. 274:37035-37040(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION AT MET-1 BY NATB.
  8. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  9. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  10. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRS28A_YEAST
AccessioniPrimary (citable) accession number: Q3E7X9
Secondary accession number(s): D6W2M5, P02380
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: November 8, 2005
Last modified: October 29, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 94500 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for S28 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome XV
    Yeast (Saccharomyces cerevisiae) chromosome XV: entries and gene names

External Data

Dasty 3