Q3E7Q9 (GLYT6_ARATH) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 41.
History...
Clusters with 
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Probable glycosyltransferase At5g25310 EC=2.4.-.- | ||||
| Gene names |
| ||||
| Organism | Arabidopsis thaliana (Mouse-ear cress) | ||||
| Taxonomic identifier | 3702 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Protein attributes
| Sequence length | 480 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | May be involved in cell wall biosynthesis. |
| Subcellular location | Golgi apparatus membrane; Single-pass type II membrane protein By similarity. |
| Disruption phenotype | No visible phenotype. Ref.3 |
| Sequence similarities | Belongs to the glycosyltransferase 47 family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cell wall biogenesis/degradation |
| Cellular component | Golgi apparatus Membrane |
| Domain | Signal-anchor Transmembrane Transmembrane helix |
| Molecular function | Glycosyltransferase Transferase |
| PTM | Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | cellular cell wall organization Inferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | Golgi membrane Inferred from electronic annotation. Source: UniProtKB-SubCell integral to membraneInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | transferase activity, transferring glycosyl groups Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 480 | 480 | Probable glycosyltransferase At5g25310 | PRO_0000392297 | |||||
Regions | |||||||||
| Topological domain | 1 – 10 | 10 | Cytoplasmic Potential | ||||||
| Transmembrane | 11 – 31 | 21 | Helical; Signal-anchor for type II membrane protein; Potential | ||||||
| Topological domain | 32 – 480 | 449 | Lumenal Potential | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 85 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 120 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 243 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 271 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 281 | 1 | N-linked (GlcNAc...) Potential | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana." Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.  Fransz P.F.Nature 408:823-826(2000) [PubMed: 11130714] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [2] | The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia. |
| [3] | "Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis." Jensen J.K., Sorensen S.O., Harholt J., Geshi N., Sakuragi Y., Moller I., Zandleven J., Bernal A.J., Jensen N.B., Sorensen C., Pauly M., Beldman G., Willats W.G., Scheller H.V. Plant Cell 20:1289-1302(2008) [PubMed: 18460606] [Abstract] Cited for: DISRUPTION PHENOTYPE. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC006258 Genomic DNA. No translation available. CP002688 Genomic DNA. Translation: AED93425.1. |
| IPI | IPI00532907. |
| RefSeq | NP_197913.4. NM_122440.5. |
| UniGene | At.54990. |
3D structure databases | |
| ProteinModelPortal | Q3E7Q9. |
| ModBase | Search... |
Protein family/group databases | |
| CAZy | GT47. Glycosyltransferase Family 47. |
Proteomic databases | |
| PRIDE | Q3E7Q9. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | AT5G25310.1; AT5G25310.1; AT5G25310. |
| GeneID | 832603. |
| GenomeReviews | Gene locus AT5G25310 in contig BA000015_GR. |
| KEGG | ath:AT5G25310. |
| NMPDR | fig|3702.1.peg.24729. |
Organism-specific databases | |
| TAIR | At5g25310. |
Phylogenomic databases | |
| eggNOG | KOG1021. |
| GeneTree | EPGT00070000028243. |
| HOGENOM | HBG744139. |
| InParanoid | Q3E7Q9. |
| PhylomeDB | Q3E7Q9. |
| ProtClustDB | CLSN2723388. |
Gene expression databases | |
| Genevestigator | Q3E7Q9. |
Family and domain databases | |
| InterPro | IPR004263. Exostosin. [Graphical view] |
| Pfam | PF03016. Exostosin. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | GLYT6_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q3E7Q9 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| SIMILARITY comments Index of protein domains and families |