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Q3BZE1 (GLGB1_XANC5) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB 1

EC=2.4.1.18
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1
Alpha-(1->4)-glucan branching enzyme 1
Glycogen branching enzyme 1
Short name=BE 1
Gene names
Name:glgB1
Ordered Locus Names:XCV0141
OrganismXanthomonas campestris pv. vesicatoria (strain 85-10) [Complete proteome] [HAMAP]
Taxonomic identifier316273 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length732 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP-Rule MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP-Rule MF_00685

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00685

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7327321,4-alpha-glucan branching enzyme GlgB 1 HAMAP-Rule MF_00685
PRO_0000260716

Sites

Active site4111Nucleophile By similarity
Active site4641Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q3BZE1 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 1B058133E21604B0

FASTA73280,866
        10         20         30         40         50         60 
MMSGVMTAVS NRWDPGAVRA LAEARHGDAF AVLGAHPSDN GRFLRTYLPG ADRVSAVLDD 

        70         80         90        100        110        120 
GQVVALDAGP EPGLFAGELP AHGGYRLRIG WPGGEQETAD PYAFGPQLSD FDLHLISEGH 

       130        140        150        160        170        180 
HLQLADALGA NVVEVDGVRG TRFAVWAPNA SRVAVVGDFN SWDARRHPMR LRHQAGVWEL 

       190        200        210        220        230        240 
FVPDVGPGAH YKYQLRGPHG HELPAKADPV ARRAELAPGT ASIVADPTPH QWSDDGWMAT 

       250        260        270        280        290        300 
RARRQAHDAP MSIYEIHAGS WLREAGLDLD WDGLADRLIP YVADMGFTHV ELMPVSEHPF 

       310        320        330        340        350        360 
GGSWGYQPLG LFAPTARFGT PDGFARFVDR CHREGIGVIV DWVPAHFPTD AHGLAHFDGT 

       370        380        390        400        410        420 
ALYEHADPRE GFHRDWNTLI YNHGRREVSG FLIASAMEFL QRYHVDGLRV DAVASMLYRD 

       430        440        450        460        470        480 
YSRNAGEWIP NIHGGRENYE TIAFLRRLNE VVREHTPGAV MIAEESTAFP GVTADVAHGG 

       490        500        510        520        530        540 
LGFHYKWNMG WMHDTLHYAG LDPIYRRYHH GELTFSMVYA YSERFVLPIS HDEVVHGKGS 

       550        560        570        580        590        600 
LLGRMPGDDW QRFANLRAYL GFMFTHPGRK LLFMGCEFGQ PTEWNHDAGL PWHLLDDPRH 

       610        620        630        640        650        660 
RGVQTLVRDL NRLYVQYPAL HAHDDDPSGF AWVVGDDAGN SVVAFLRKGK RGDAPVLVVI 

       670        680        690        700        710        720 
NFTPVVQHGY RIGVPQGGQW REVFNSDAGI YGGSNLGNGG SVTAEQQSMH GHAQSLPLLL 

       730 
PPLGAIVLTP YG 

« Hide

References

[1]"Insights into genome plasticity and pathogenicity of the plant pathogenic Bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence."
Thieme F., Koebnik R., Bekel T., Berger C., Boch J., Buettner D., Caldana C., Gaigalat L., Goesmann A., Kay S., Kirchner O., Lanz C., Linke B., McHardy A.C., Meyer F., Mittenhuber G., Nies D.H., Niesbach-Kloesgen U. expand/collapse author list , Patschkowski T., Rueckert C., Rupp O., Schneiker S., Schuster S.C., Vorhoelter F.J., Weber E., Puehler A., Bonas U., Bartels D., Kaiser O.
J. Bacteriol. 187:7254-7266(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 85-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM039952 Genomic DNA. Translation: CAJ21772.1.
RefSeqYP_361872.1. NC_007508.1.

3D structure databases

ProteinModelPortalQ3BZE1.
SMRQ3BZE1. Positions 120-730.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316273.XCV0141.

Protein family/group databases

CAZyCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAJ21772; CAJ21772; XCV0141.
GeneID3732482.
KEGGxcv:XCV0141.
PATRIC24089642. VBIXanCam71633_0336.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0296.
HOGENOMHOG000283037.
KOK00700.
OMAAKLLFMG.
OrthoDBEOG6JX7GT.

Enzyme and pathway databases

BioCycXCAM316273:GJF8-144-MONOMER.
UniPathwayUPA00164.

Family and domain databases

Gene3D2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPMF_00685. GlgB.
InterProIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsTIGR01515. branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGB1_XANC5
AccessionPrimary (citable) accession number: Q3BZE1
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 22, 2005
Last modified: June 11, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries