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Q3BZE1

- GLGB1_XANC5

UniProt

Q3BZE1 - GLGB1_XANC5

Protein

1,4-alpha-glucan branching enzyme GlgB 1

Gene

glgB1

Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei411 – 4111NucleophileUniRule annotation
    Active sitei464 – 4641Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciXCAM316273:GJF8-144-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgB 1UniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1UniRule annotation
    Alpha-(1->4)-glucan branching enzyme 1UniRule annotation
    Glycogen branching enzyme 1UniRule annotation
    Short name:
    BE 1UniRule annotation
    Gene namesi
    Name:glgB1UniRule annotation
    Ordered Locus Names:XCV0141
    OrganismiXanthomonas campestris pv. vesicatoria (strain 85-10)
    Taxonomic identifieri316273 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000007069: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7327321,4-alpha-glucan branching enzyme GlgB 1PRO_0000260716Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi316273.XCV0141.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3BZE1.
    SMRiQ3BZE1. Positions 120-730.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiAKLLFMG.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q3BZE1-1 [UniParc]FASTAAdd to Basket

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    MMSGVMTAVS NRWDPGAVRA LAEARHGDAF AVLGAHPSDN GRFLRTYLPG    50
    ADRVSAVLDD GQVVALDAGP EPGLFAGELP AHGGYRLRIG WPGGEQETAD 100
    PYAFGPQLSD FDLHLISEGH HLQLADALGA NVVEVDGVRG TRFAVWAPNA 150
    SRVAVVGDFN SWDARRHPMR LRHQAGVWEL FVPDVGPGAH YKYQLRGPHG 200
    HELPAKADPV ARRAELAPGT ASIVADPTPH QWSDDGWMAT RARRQAHDAP 250
    MSIYEIHAGS WLREAGLDLD WDGLADRLIP YVADMGFTHV ELMPVSEHPF 300
    GGSWGYQPLG LFAPTARFGT PDGFARFVDR CHREGIGVIV DWVPAHFPTD 350
    AHGLAHFDGT ALYEHADPRE GFHRDWNTLI YNHGRREVSG FLIASAMEFL 400
    QRYHVDGLRV DAVASMLYRD YSRNAGEWIP NIHGGRENYE TIAFLRRLNE 450
    VVREHTPGAV MIAEESTAFP GVTADVAHGG LGFHYKWNMG WMHDTLHYAG 500
    LDPIYRRYHH GELTFSMVYA YSERFVLPIS HDEVVHGKGS LLGRMPGDDW 550
    QRFANLRAYL GFMFTHPGRK LLFMGCEFGQ PTEWNHDAGL PWHLLDDPRH 600
    RGVQTLVRDL NRLYVQYPAL HAHDDDPSGF AWVVGDDAGN SVVAFLRKGK 650
    RGDAPVLVVI NFTPVVQHGY RIGVPQGGQW REVFNSDAGI YGGSNLGNGG 700
    SVTAEQQSMH GHAQSLPLLL PPLGAIVLTP YG 732
    Length:732
    Mass (Da):80,866
    Last modified:November 22, 2005 - v1
    Checksum:i1B058133E21604B0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM039952 Genomic DNA. Translation: CAJ21772.1.
    RefSeqiWP_011345883.1. NC_007508.1.
    YP_361872.1. NC_007508.1.

    Genome annotation databases

    EnsemblBacteriaiCAJ21772; CAJ21772; XCV0141.
    GeneIDi3732482.
    KEGGixcv:XCV0141.
    PATRICi24089642. VBIXanCam71633_0336.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM039952 Genomic DNA. Translation: CAJ21772.1 .
    RefSeqi WP_011345883.1. NC_007508.1.
    YP_361872.1. NC_007508.1.

    3D structure databases

    ProteinModelPortali Q3BZE1.
    SMRi Q3BZE1. Positions 120-730.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316273.XCV0141.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAJ21772 ; CAJ21772 ; XCV0141 .
    GeneIDi 3732482.
    KEGGi xcv:XCV0141.
    PATRICi 24089642. VBIXanCam71633_0336.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi AKLLFMG.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci XCAM316273:GJF8-144-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 85-10.

    Entry informationi

    Entry nameiGLGB1_XANC5
    AccessioniPrimary (citable) accession number: Q3BZE1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3