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Q3BYI0 (GLGB2_XANC5) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB 2

EC=2.4.1.18
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2
Alpha-(1->4)-glucan branching enzyme 2
Glycogen branching enzyme 2
Short name=BE 2
Gene names
Name:glgB2
Ordered Locus Names:XCV0452
OrganismXanthomonas campestris pv. vesicatoria (strain 85-10) [Complete proteome] [HAMAP]
Taxonomic identifier316273 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length743 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP-Rule MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP-Rule MF_00685

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00685

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7437431,4-alpha-glucan branching enzyme GlgB 2 HAMAP-Rule MF_00685
PRO_0000260717

Sites

Active site4221Nucleophile By similarity
Active site4751Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q3BYI0 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 993B9A7E05F84474

FASTA74381,692
        10         20         30         40         50         60 
MSERQGGQEQ RTEADGMTTE GISETSQTLQ ALANGLPADA FAVLGPKPLA EGRRQVRVLA 

        70         80         90        100        110        120 
PGAEAMGLID PRGKLLARMQ ASAIDGVFEG ILAADGPYRL RIVWPDRVQE VEDPYAFAAT 

       130        140        150        160        170        180 
LDESLLLQIA AGDGQAVRRA LGAQHVHCGD VPGVRFAVWA PHAQRVAVVG DFNGWDVRRH 

       190        200        210        220        230        240 
PMRQRIGGFW ELFLPRVEAG ARYKYAVTAA DGRVLLKADP VARQTELPPA TASVVPSAAA 

       250        260        270        280        290        300 
FAWTDAAWMA NRDPGAVPAP LSIYEVHAAS WRRDGHNQPL DWPTLAEQLI PYVQQLGFTH 

       310        320        330        340        350        360 
IELLPITEHP FGGSWGYQPL GLYAPTARHG SPDGFAQFVD ACHRAGIGVI LDWVSAHFPD 

       370        380        390        400        410        420 
DAHGLAQFDG AALYEHADPR EGMHRDWNTL IYNYGRPEVT AYLLGSALEW IEHYHLDGLR 

       430        440        450        460        470        480 
VDAVASMLYR DYGRAEGEWV PNAHGGRENL EAVAFLRQLN REIATQFPGV LTIAEESTAW 

       490        500        510        520        530        540 
PGVTAAISDG GLGFTHKWNM GWMHDTLGYM QRDPAERAQH HSQLTFGLVY AFDERFVLPL 

       550        560        570        580        590        600 
SHDEVVHGTG GLLGQMPGDD WRRFANLRAY LALMWAHPGD KLLFMGAEFG QWADWNHDQS 

       610        620        630        640        650        660 
LDWHLLDGAR HRGMQQLVGD LNAALRRTPA LYRGSHRADG FDWSVADDAR NSVLAFVRHD 

       670        680        690        700        710        720 
PAGGAPLLAV SNLTPQPHHD YHVGVPRAGL WREILNTDSA HYGGSNLGNS GRLATEPVGM 

       730        740 
HGHAQRLRLT LPPLATIYLQ AEK 

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References

[1]"Insights into genome plasticity and pathogenicity of the plant pathogenic Bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence."
Thieme F., Koebnik R., Bekel T., Berger C., Boch J., Buettner D., Caldana C., Gaigalat L., Goesmann A., Kay S., Kirchner O., Lanz C., Linke B., McHardy A.C., Meyer F., Mittenhuber G., Nies D.H., Niesbach-Kloesgen U. expand/collapse author list , Patschkowski T., Rueckert C., Rupp O., Schneiker S., Schuster S.C., Vorhoelter F.J., Weber E., Puehler A., Bonas U., Bartels D., Kaiser O.
J. Bacteriol. 187:7254-7266(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 85-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM039952 Genomic DNA. Translation: CAJ22083.1.
RefSeqYP_362183.1. NC_007508.1.

3D structure databases

ProteinModelPortalQ3BYI0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316273.XCV0452.

Protein family/group databases

CAZyCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAJ22083; CAJ22083; XCV0452.
GeneID3732483.
KEGGxcv:XCV0452.
PATRIC24090254. VBIXanCam71633_0641.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0296.
HOGENOMHOG000283037.
KOK00700.
OMAALEWIEH.
OrthoDBEOG6JX7GT.

Enzyme and pathway databases

BioCycXCAM316273:GJF8-460-MONOMER.
UniPathwayUPA00164.

Family and domain databases

Gene3D2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPMF_00685. GlgB.
InterProIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsTIGR01515. branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGB2_XANC5
AccessionPrimary (citable) accession number: Q3BYI0
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 22, 2005
Last modified: June 11, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries