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Q3BYI0

- GLGB2_XANC5

UniProt

Q3BYI0 - GLGB2_XANC5

Protein

1,4-alpha-glucan branching enzyme GlgB 2

Gene

glgB2

Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei422 – 4221NucleophileUniRule annotation
    Active sitei475 – 4751Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciXCAM316273:GJF8-460-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgB 2UniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2UniRule annotation
    Alpha-(1->4)-glucan branching enzyme 2UniRule annotation
    Glycogen branching enzyme 2UniRule annotation
    Short name:
    BE 2UniRule annotation
    Gene namesi
    Name:glgB2UniRule annotation
    Ordered Locus Names:XCV0452
    OrganismiXanthomonas campestris pv. vesicatoria (strain 85-10)
    Taxonomic identifieri316273 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000007069: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7437431,4-alpha-glucan branching enzyme GlgB 2PRO_0000260717Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi316273.XCV0452.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3BYI0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiALEWIEH.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q3BYI0-1 [UniParc]FASTAAdd to Basket

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    MSERQGGQEQ RTEADGMTTE GISETSQTLQ ALANGLPADA FAVLGPKPLA    50
    EGRRQVRVLA PGAEAMGLID PRGKLLARMQ ASAIDGVFEG ILAADGPYRL 100
    RIVWPDRVQE VEDPYAFAAT LDESLLLQIA AGDGQAVRRA LGAQHVHCGD 150
    VPGVRFAVWA PHAQRVAVVG DFNGWDVRRH PMRQRIGGFW ELFLPRVEAG 200
    ARYKYAVTAA DGRVLLKADP VARQTELPPA TASVVPSAAA FAWTDAAWMA 250
    NRDPGAVPAP LSIYEVHAAS WRRDGHNQPL DWPTLAEQLI PYVQQLGFTH 300
    IELLPITEHP FGGSWGYQPL GLYAPTARHG SPDGFAQFVD ACHRAGIGVI 350
    LDWVSAHFPD DAHGLAQFDG AALYEHADPR EGMHRDWNTL IYNYGRPEVT 400
    AYLLGSALEW IEHYHLDGLR VDAVASMLYR DYGRAEGEWV PNAHGGRENL 450
    EAVAFLRQLN REIATQFPGV LTIAEESTAW PGVTAAISDG GLGFTHKWNM 500
    GWMHDTLGYM QRDPAERAQH HSQLTFGLVY AFDERFVLPL SHDEVVHGTG 550
    GLLGQMPGDD WRRFANLRAY LALMWAHPGD KLLFMGAEFG QWADWNHDQS 600
    LDWHLLDGAR HRGMQQLVGD LNAALRRTPA LYRGSHRADG FDWSVADDAR 650
    NSVLAFVRHD PAGGAPLLAV SNLTPQPHHD YHVGVPRAGL WREILNTDSA 700
    HYGGSNLGNS GRLATEPVGM HGHAQRLRLT LPPLATIYLQ AEK 743
    Length:743
    Mass (Da):81,692
    Last modified:November 22, 2005 - v1
    Checksum:i993B9A7E05F84474
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM039952 Genomic DNA. Translation: CAJ22083.1.
    RefSeqiWP_011346122.1. NC_007508.1.
    YP_362183.1. NC_007508.1.

    Genome annotation databases

    EnsemblBacteriaiCAJ22083; CAJ22083; XCV0452.
    GeneIDi3732483.
    KEGGixcv:XCV0452.
    PATRICi24090254. VBIXanCam71633_0641.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM039952 Genomic DNA. Translation: CAJ22083.1 .
    RefSeqi WP_011346122.1. NC_007508.1.
    YP_362183.1. NC_007508.1.

    3D structure databases

    ProteinModelPortali Q3BYI0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316273.XCV0452.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAJ22083 ; CAJ22083 ; XCV0452 .
    GeneIDi 3732483.
    KEGGi xcv:XCV0452.
    PATRICi 24090254. VBIXanCam71633_0641.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi ALEWIEH.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci XCAM316273:GJF8-460-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 85-10.

    Entry informationi

    Entry nameiGLGB2_XANC5
    AccessioniPrimary (citable) accession number: Q3BYI0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3