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Protein

Probable lipid kinase YegS-like

Gene

XCV0504

Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Probably phosphorylates lipids; the in vivo substrate is unknown.UniRule annotation

Cofactori

Mg2+UniRule annotation, Ca2+UniRule annotationNote: Binds 1 Mg2+ ion per subunit. Ca2+ may be able to substitute.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei39 – 391ATPUniRule annotation
Binding sitei96 – 961ATPUniRule annotation
Metal bindingi219 – 2191Magnesium; via carbonyl oxygenUniRule annotation
Metal bindingi222 – 2221MagnesiumUniRule annotation
Metal bindingi224 – 2241Magnesium; via carbonyl oxygenUniRule annotation
Active sitei280 – 2801Proton acceptorUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi65 – 717ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Lipid biosynthesis, Lipid metabolism, Phospholipid biosynthesis, Phospholipid metabolism

Keywords - Ligandi

ATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciXCAM316273:GJF8-512-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable lipid kinase YegS-likeUniRule annotation (EC:2.7.1.-UniRule annotation)
Gene namesi
Ordered Locus Names:XCV0504
OrganismiXanthomonas campestris pv. vesicatoria (strain 85-10)
Taxonomic identifieri316273 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000007069 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 309309Probable lipid kinase YegS-likePRO_0000292167Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi316273.XCV0504.

Structurei

3D structure databases

ProteinModelPortaliQ3BYC8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 134134DAGKcUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the diacylglycerol/lipid kinase family. YegS lipid kinase subfamily.UniRule annotation
Contains 1 DAGKc domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107TE5. Bacteria.
COG1597. LUCA.
HOGENOMiHOG000261396.
OMAiHWQGDLL.
OrthoDBiEOG613098.

Family and domain databases

HAMAPiMF_01377. YegS.
InterProiIPR005218. Diacylglycerol/lipid_kinase.
IPR001206. Diacylglycerol_kinase_cat_dom.
IPR022433. Lip_kinase_YegS.
IPR016064. NAD/diacylglycerol_kinase.
[Graphical view]
PfamiPF00781. DAGK_cat. 1 hit.
[Graphical view]
SMARTiSM00046. DAGKc. 1 hit.
[Graphical view]
SUPFAMiSSF111331. SSF111331. 1 hit.
TIGRFAMsiTIGR03702. lip_kinase_YegS. 1 hit.
TIGR00147. TIGR00147. 1 hit.
PROSITEiPS50146. DAGK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3BYC8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSHWRVIL NGKSTDNMDL REAVGTLRKR GIQLDVRVTW EDGDAERYVG
60 70 80 90 100
EAVADGVHTV VAAGGDGTLS EVAAALAHHE GDAASLPSLG LVPLGTANDF
110 120 130 140 150
ATAANLPIAP LEALTLIAER VAQPVDLLRI DADHGPHWCA NVASGGFGTQ
160 170 180 190 200
VTVETDEGLK KMLGGLAYLI TGMSRLGRID PISARFSGPE FSWEGEFIAL
210 220 230 240 250
GLGNGRQAGG GQALCPEALI DDGLLDVTIV PDLDGEVAAT LGTLVIGGKQ
260 270 280 290 300
AALERVAVRA RVPWLEIVSQ QPLTLNLDGE PETSRHFRIE CVPARLRMHL

PGECPLLGG
Length:309
Mass (Da):32,458
Last modified:November 22, 2005 - v1
Checksum:iFFC416DA07E319DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM039952 Genomic DNA. Translation: CAJ22135.1.
RefSeqiWP_011346165.1. NC_007508.1.

Genome annotation databases

EnsemblBacteriaiCAJ22135; CAJ22135; XCV0504.
KEGGixcv:XCV0504.
PATRICi24090354. VBIXanCam71633_0691.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM039952 Genomic DNA. Translation: CAJ22135.1.
RefSeqiWP_011346165.1. NC_007508.1.

3D structure databases

ProteinModelPortaliQ3BYC8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316273.XCV0504.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ22135; CAJ22135; XCV0504.
KEGGixcv:XCV0504.
PATRICi24090354. VBIXanCam71633_0691.

Phylogenomic databases

eggNOGiENOG4107TE5. Bacteria.
COG1597. LUCA.
HOGENOMiHOG000261396.
OMAiHWQGDLL.
OrthoDBiEOG613098.

Enzyme and pathway databases

BioCyciXCAM316273:GJF8-512-MONOMER.

Family and domain databases

HAMAPiMF_01377. YegS.
InterProiIPR005218. Diacylglycerol/lipid_kinase.
IPR001206. Diacylglycerol_kinase_cat_dom.
IPR022433. Lip_kinase_YegS.
IPR016064. NAD/diacylglycerol_kinase.
[Graphical view]
PfamiPF00781. DAGK_cat. 1 hit.
[Graphical view]
SMARTiSM00046. DAGKc. 1 hit.
[Graphical view]
SUPFAMiSSF111331. SSF111331. 1 hit.
TIGRFAMsiTIGR03702. lip_kinase_YegS. 1 hit.
TIGR00147. TIGR00147. 1 hit.
PROSITEiPS50146. DAGK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 85-10.

Entry informationi

Entry nameiYEGS_XANC5
AccessioniPrimary (citable) accession number: Q3BYC8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: November 22, 2005
Last modified: December 9, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.