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Q3BX52 (SYQ_XANC5) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glutamine--tRNA ligase

EC=6.1.1.18
Alternative name(s):
Glutaminyl-tRNA synthetase
Short name=GlnRS
Gene names
Name:glnS
Ordered Locus Names:XCV0930
OrganismXanthomonas campestris pv. vesicatoria (strain 85-10) [Complete proteome] [HAMAP]
Taxonomic identifier316273 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length579 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln). HAMAP-Rule MF_00126

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00126

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00126.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglutaminyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

glutamyl-tRNA aminoacylation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

glutamine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 579579Glutamine--tRNA ligase HAMAP-Rule MF_00126
PRO_0000242881

Regions

Motif41 – 5111"HIGH" region HAMAP-Rule MF_00126
Motif292 – 2965"KMSKS" region HAMAP-Rule MF_00126

Sites

Binding site2951ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
Q3BX52 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 430E1CA0B79E452D

FASTA57965,842
        10         20         30         40         50         60 
MSETLATDAT APAEKKDFIR QIVREDLASG KHTVIRTRFP PEPNGYLHIG HAKAICLDFG 

        70         80         90        100        110        120 
LAAEFGGLCN LRLDDTNPAK EDPEFVVAIQ DDVRWLGYEW AQLRHASDYF QVYYLAAQKL 

       130        140        150        160        170        180 
IRDGHAFVCD LSAEQVRQYR GTLTEPGRNS PFRERSVEEN LELFARMRAG EFPDGARTLR 

       190        200        210        220        230        240 
AKIDMASGNI NLRDPALYRI KHVEHQNTGN AWPIYPMYDF AHSLGDAVEG ITHSLCTLEF 

       250        260        270        280        290        300 
EDHRPLYDWC VDKVDLAGHP ELLQPLLDKG LPREAAKPRQ IEFSRLNINY TVMSKRKLTA 

       310        320        330        340        350        360 
LVEEQLVDGW DDPRMYTLQG LRRRGYTPAA MRLFVDRVGI SKQNSLIDFS VLEGCLREDL 

       370        380        390        400        410        420 
DAAAPRRMAV IDPLKLVLTN LPEGHTETLQ FSNHPKDESF GTREVPFARE LWIEREDFAE 

       430        440        450        460        470        480 
VPPKGWKRLV PGGEIRLRGA GIARVDEVIK NADGEIVELR GWLDPESRPG MEGANRKVKG 

       490        500        510        520        530        540 
TIHWVSAVHA VEAEIRLYDR LFSVEKPDDE SEGKTYRDYL NPESKRNVRG YVEPSAAMAA 

       550        560        570 
PEQAFQFERS GYFVADRRDH SAATPVFNRS VTLRDTWAK 

« Hide

References

[1]"Insights into genome plasticity and pathogenicity of the plant pathogenic Bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence."
Thieme F., Koebnik R., Bekel T., Berger C., Boch J., Buettner D., Caldana C., Gaigalat L., Goesmann A., Kay S., Kirchner O., Lanz C., Linke B., McHardy A.C., Meyer F., Mittenhuber G., Nies D.H., Niesbach-Kloesgen U. expand/collapse author list , Patschkowski T., Rueckert C., Rupp O., Schneiker S., Schuster S.C., Vorhoelter F.J., Weber E., Puehler A., Bonas U., Bartels D., Kaiser O.
J. Bacteriol. 187:7254-7266(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 85-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM039952 Genomic DNA. Translation: CAJ22561.1.
RefSeqYP_362661.1. NC_007508.1.

3D structure databases

ProteinModelPortalQ3BX52.
SMRQ3BX52. Positions 17-576.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316273.XCV0930.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAJ22561; CAJ22561; XCV0930.
GeneID3729267.
KEGGxcv:XCV0930.
PATRIC24091264. VBIXanCam71633_1144.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0008.
HOGENOMHOG000259232.
KOK01886.
OMASREIYID.
OrthoDBEOG6DRPF7.

Enzyme and pathway databases

BioCycXCAM316273:GJF8-945-MONOMER.

Family and domain databases

Gene3D1.10.1160.10. 1 hit.
2.40.240.10. 2 hits.
3.40.50.620. 2 hits.
HAMAPMF_00126. Gln_tRNA_synth.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR004514. Gln-tRNA-synth.
IPR022861. Gln_tRNA_ligase_bac.
IPR000924. Glu/Gln-tRNA-synth.
IPR020061. Glu/Gln-tRNA-synth_Ib_a-bdl.
IPR020058. Glu/Gln-tRNA-synth_Ib_cat-dom.
IPR020059. Glu/Gln-tRNA-synth_Ib_codon-bd.
IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PANTHERPTHR10119. PTHR10119. 1 hit.
PfamPF00749. tRNA-synt_1c. 1 hit.
PF03950. tRNA-synt_1c_C. 1 hit.
[Graphical view]
PRINTSPR00987. TRNASYNTHGLU.
SUPFAMSSF50715. SSF50715. 1 hit.
TIGRFAMsTIGR00440. glnS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYQ_XANC5
AccessionPrimary (citable) accession number: Q3BX52
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: November 22, 2005
Last modified: May 14, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries