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Protein
Submitted name:

AraC-type transcriptional regulator HrpX

Gene

hrpXv

Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi393 – 414H-T-H motifPROSITE-ProRule annotationAdd BLAST22
DNA bindingi443 – 466H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
AraC-type transcriptional regulator HrpXImported
Gene namesi
Name:hrpXvImported
Ordered Locus Names:XCV1315Imported
OrganismiXanthomonas campestris pv. vesicatoria (strain 85-10)Imported
Taxonomic identifieri316273 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000007069 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316273.XCV1315.

Structurei

3D structure databases

ProteinModelPortaliQ3BW17.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini375 – 476HTH araC/xylS-type DNA-bindingInterPro annotationAdd BLAST102

Phylogenomic databases

eggNOGiENOG41061VR. Bacteria.
COG2207. LUCA.
HOGENOMiHOG000226752.
OMAiMIAQLRI.
OrthoDBiPOG091H0KAZ.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR011990. TPR-like_helical_dom.
PfamiView protein in Pfam
PF12833. HTH_18. 1 hit.
SMARTiView protein in SMART
SM00342. HTH_ARAC. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48452. SSF48452. 1 hit.
PROSITEiView protein in PROSITE
PS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3BW17-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILSTYFAAI SALSYAERLP TYTSRMLVGA WPQGLQHLQQ RRDGQGAADG
60 70 80 90 100
ADDEVSLFGA SGDALLILEY QEEAEDAYRQ ALKAMRGHQR QLRLLSCRNT
110 120 130 140 150
AWLMLRQRRL SAALNCFAQL AMDRETPPSL CGESLLGKSL THFHLGQSTL
160 170 180 190 200
ALQTLERARE VLADLESGAS DWLRIATALR LDMIAQLRIR RSDRMSDHVF
210 220 230 240 250
WQATLRQEDA THAFEPSDLR ACIADLAESM PVLAQRMRHV RSLLRIAGGD
260 270 280 290 300
TFGFDAQIDA LPAAATGCPP CARQDAQVEL ALAALAVGRA DLAERALAGA
310 320 330 340 350
GRHHAPRWNL EFEYCQAKIS QAMGRTEQAL LLYNRYALGA VQCLRSEVQA
360 370 380 390 400
PRLLESGTPA HVSDDISARL PAKYRRAYSY MITNAHRSDL SINEVAAQIG
410 420 430 440 450
VTGRALQQAF KSATGLSPTQ VLRRYRMQSI RDELLAEGGC GSVLQAASRW
460 470
GVGSRSALAK GYRQHFNEAP METLQR
Length:476
Mass (Da):52,533
Last modified:January 10, 2006 - v1
Checksum:iB46B6F6EE1CBDDFE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM039952 Genomic DNA. Translation: CAJ22946.1.
RefSeqiWP_011346769.1. NZ_CP017190.1.

Genome annotation databases

EnsemblBacteriaiCAJ22946; CAJ22946; XCV1315.
KEGGixcv:XCV1315.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ3BW17_XANC5
AccessioniPrimary (citable) accession number: Q3BW17
Entry historyiIntegrated into UniProtKB/TrEMBL: January 10, 2006
Last sequence update: January 10, 2006
Last modified: June 7, 2017
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported