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Q3BVT8 (Q3BVT8_XANC5) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=6.5.1.1 EMBL CAJ23025.1
Gene names
Ordered Locus Names:XCV1394 EMBL CAJ23025.1
OrganismXanthomonas campestris pv. vesicatoria (strain 85-10) [Complete proteome] [HAMAP]
Taxonomic identifier316273 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length534 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAJ23025.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3BVT8 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 54DE1A76571E9A7E

FASTA53459,895
        10         20         30         40         50         60 
MKRFAALYRA LDRSTGTLDK RAALVAYFRD APALDAAWAL YLLAGGKVAS ARMRIASSGE 

        70         80         90        100        110        120 
LREWITDTAG VADWLVADSY DHVGDLAETL ALLLDDPVAE AADLPLAEWI EQRLLPIANQ 

       130        140        150        160        170        180 
DVQVRKACIV QAWRSLAFDE RLVFNKLLTG ALRVGVSQRL VQQALAELSG VDIARIAQRM 

       190        200        210        220        230        240 
LGSWRPHPTY LADLLTSEEL PGDRQQPYPF FLASPLEAEV DTLGAIDDWL LEWKWDGIRL 

       250        260        270        280        290        300 
QLIRRAGEAA LWSRGEERLD GRFPEIEHAA LQLPDGTVID GELLAWQPEQ PLPMPFTALQ 

       310        320        330        340        350        360 
TRIQRLKPGP KTLAAAPARV VAYDLLELAG EDLRERPLQE RRALLEGVLA TLADPRIVAS 

       370        380        390        400        410        420 
PLVQVSDWQA AAQVRVEARE RGVEGLMLKR ASSVYQSGRR RGDWWKWKID PLTIDAVLLY 

       430        440        450        460        470        480 
AQAGHGRRST LYTDYTFGLW HEGQLVPIAK AYSGLDDKEI LQLDRWIRAN TTERFGPVRA 

       490        500        510        520        530 
VTAHHVFELG FEAVNRSARH KSGIAVRFPR ILRWRHDKPM AEADHLSTLQ ALAR 

« Hide

References

[1]"Insights into genome plasticity and pathogenicity of the plant pathogenic Bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence."
Thieme F., Koebnik R., Bekel T., Berger C., Boch J., Buettner D., Caldana C., Gaigalat L., Goesmann A., Kay S., Kirchner O., Lanz C., Linke B., McHardy A.C., Meyer F., Mittenhuber G., Nies D.H., Niesbach-Kloesgen U. expand/collapse author list , Patschkowski T., Rueckert C., Rupp O., Schneiker S., Schuster S.C., Vorhoelter F.J., Weber E., Puehler A., Bonas U., Bartels D., Kaiser O.
J. Bacteriol. 187:7254-7266(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 85-10 EMBL CAJ23025.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM039952 Genomic DNA. Translation: CAJ23025.1.
RefSeqYP_363125.1. NC_007508.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316273.XCV1394.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAJ23025; CAJ23025; XCV1394.
GeneID3731460.
KEGGxcv:XCV1394.
PATRIC24092252. VBIXanCam71633_1621.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAKSASTHN.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycXCAM316273:GJF8-1434-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3BVT8_XANC5
AccessionPrimary (citable) accession number: Q3BVT8
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)