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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

XCV1394

Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXCAM316273:GJF8-1434-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:XCV1394Imported
OrganismiXanthomonas campestris pv. vesicatoria (strain 85-10)Imported
Taxonomic identifieri316273 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000007069 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316273.XCV1394.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3BVT8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFAALYRA LDRSTGTLDK RAALVAYFRD APALDAAWAL YLLAGGKVAS
60 70 80 90 100
ARMRIASSGE LREWITDTAG VADWLVADSY DHVGDLAETL ALLLDDPVAE
110 120 130 140 150
AADLPLAEWI EQRLLPIANQ DVQVRKACIV QAWRSLAFDE RLVFNKLLTG
160 170 180 190 200
ALRVGVSQRL VQQALAELSG VDIARIAQRM LGSWRPHPTY LADLLTSEEL
210 220 230 240 250
PGDRQQPYPF FLASPLEAEV DTLGAIDDWL LEWKWDGIRL QLIRRAGEAA
260 270 280 290 300
LWSRGEERLD GRFPEIEHAA LQLPDGTVID GELLAWQPEQ PLPMPFTALQ
310 320 330 340 350
TRIQRLKPGP KTLAAAPARV VAYDLLELAG EDLRERPLQE RRALLEGVLA
360 370 380 390 400
TLADPRIVAS PLVQVSDWQA AAQVRVEARE RGVEGLMLKR ASSVYQSGRR
410 420 430 440 450
RGDWWKWKID PLTIDAVLLY AQAGHGRRST LYTDYTFGLW HEGQLVPIAK
460 470 480 490 500
AYSGLDDKEI LQLDRWIRAN TTERFGPVRA VTAHHVFELG FEAVNRSARH
510 520 530
KSGIAVRFPR ILRWRHDKPM AEADHLSTLQ ALAR
Length:534
Mass (Da):59,895
Last modified:November 22, 2005 - v1
Checksum:i54DE1A76571E9A7E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM039952 Genomic DNA. Translation: CAJ23025.1.
RefSeqiWP_011346833.1. NC_007508.1.

Genome annotation databases

EnsemblBacteriaiCAJ23025; CAJ23025; XCV1394.
KEGGixcv:XCV1394.
PATRICi24092252. VBIXanCam71633_1621.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM039952 Genomic DNA. Translation: CAJ23025.1.
RefSeqiWP_011346833.1. NC_007508.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316273.XCV1394.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ23025; CAJ23025; XCV1394.
KEGGixcv:XCV1394.
PATRICi24092252. VBIXanCam71633_1621.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciXCAM316273:GJF8-1434-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 85-10Imported.

Entry informationi

Entry nameiQ3BVT8_XANC5
AccessioniPrimary (citable) accession number: Q3BVT8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: July 22, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.