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Q3BMF2

- XYLA_XANC5

UniProt

Q3BMF2 - XYLA_XANC5

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Protein

Xylose isomerase

Gene
xylA1, XCV1808, XCV4330
Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotation

Cofactori

Binds 2 magnesium ions per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei109 – 1091 By similarity
Active sitei112 – 1121 By similarity
Metal bindingi240 – 2401Magnesium 1 By similarity
Metal bindingi276 – 2761Magnesium 1 By similarity
Metal bindingi276 – 2761Magnesium 2 By similarity
Metal bindingi279 – 2791Magnesium 2 By similarity
Metal bindingi304 – 3041Magnesium 1 By similarity
Metal bindingi315 – 3151Magnesium 2 By similarity
Metal bindingi317 – 3171Magnesium 2 By similarity
Metal bindingi347 – 3471Magnesium 1 By similarity

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Biological processi

Carbohydrate metabolism, Pentose shunt, Xylose metabolism

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciXCAM316273:GJF8-1856-MONOMER.
XCAM316273:GJF8-4444-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomerase (EC:5.3.1.5)
Gene namesi
Name:xylA1
Ordered Locus Names:XCV1808, XCV4330
OrganismiXanthomonas campestris pv. vesicatoria (strain 85-10)
Taxonomic identifieri316273 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000007069: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 445445Xylose isomeraseUniRule annotationPRO_0000236977Add
BLAST

Interactioni

Subunit structurei

Homotetramer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi316273.XCV4330.

Structurei

3D structure databases

ProteinModelPortaliQ3BMF2.
SMRiQ3BMF2. Positions 10-444.

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.

Phylogenomic databases

eggNOGiCOG2115.
HOGENOMiHOG000252293.
KOiK01805.
OMAiLFHAHIG.
OrthoDBiEOG62NX4R.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3BMF2-1 [UniParc]FASTAAdd to Basket

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MSNTVYIGAK EYFPGIGKIG FEGRDSDNPL AFKVYDANKT IGDKTMAEHL    50
RFAVAYWHSF CGNGADPFGP GTRAYPWDAG TTALNRAEAK ADAAFEFFTK 100
LGVPYYCFHD IDLAPDADDI GEYEKNLKHM VGIAKQRQAD TGIKLLWGTA 150
NLFSHPRYMN GASTNPDFNV VARAAVQVKA AIDATVELGG ENYVFWGGRE 200
GYACLHNTQM KREQDNMARF LTLARDYGRA IGFKGNFLIE PKPMEPMKHQ 250
YDFDSATVIG FLRQHGLDQD FKLNIEANHA TLSGHSFEHD LQVASDAGLL 300
GSIDANRGNP QNGWDTDQFP TDLYDTVGAM LVVLRQGGLA PGGLNFDAKV 350
RRESSDPQDL FLAHIGGMDA FARGLEVANA LLTASPLEQW RAERYASFDS 400
GAGADFAAGK TTLADLAKHA ASNAPQQLSG RQEAYENLIN QYLTR 445
Length:445
Mass (Da):48,791
Last modified:November 22, 2005 - v1
Checksum:i4249F0C771C88ECD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM039952 Genomic DNA. Translation: CAJ26061.1.
AM039952 Genomic DNA. Translation: CAJ23485.1.
RefSeqiWP_011347136.1. NC_007508.1.
YP_363539.1. NC_007508.1.
YP_366061.1. NC_007508.1.

Genome annotation databases

EnsemblBacteriaiCAJ23485; CAJ23485; XCV1808.
CAJ26061; CAJ26061; XCV4330.
GeneIDi3729337.
3731186.
KEGGixcv:XCV1808.
xcv:XCV4330.
PATRICi24093160. VBIXanCam71633_2069.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM039952 Genomic DNA. Translation: CAJ26061.1 .
AM039952 Genomic DNA. Translation: CAJ23485.1 .
RefSeqi WP_011347136.1. NC_007508.1.
YP_363539.1. NC_007508.1.
YP_366061.1. NC_007508.1.

3D structure databases

ProteinModelPortali Q3BMF2.
SMRi Q3BMF2. Positions 10-444.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316273.XCV4330.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAJ23485 ; CAJ23485 ; XCV1808 .
CAJ26061 ; CAJ26061 ; XCV4330 .
GeneIDi 3729337.
3731186.
KEGGi xcv:XCV1808.
xcv:XCV4330.
PATRICi 24093160. VBIXanCam71633_2069.

Phylogenomic databases

eggNOGi COG2115.
HOGENOMi HOG000252293.
KOi K01805.
OMAi LFHAHIG.
OrthoDBi EOG62NX4R.

Enzyme and pathway databases

BioCyci XCAM316273:GJF8-1856-MONOMER.
XCAM316273:GJF8-4444-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 85-10.

Entry informationi

Entry nameiXYLA_XANC5
AccessioniPrimary (citable) accession number: Q3BMF2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: November 22, 2005
Last modified: September 3, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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