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Q3B7U6

- Q3B7U6_RAT

UniProt

Q3B7U6 - Q3B7U6_RAT

Protein
Submitted name:

Protein LOC100909437

Gene

Cct8l1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW

    GO - Biological processi

    1. protein folding Source: InterPro

    Keywords - Molecular functioni

    ChaperoneUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein LOC100909437Imported
    Submitted name:
    Similar to Gene model 443Imported
    Gene namesi
    Name:Cct8l1Imported
    Synonyms:LOC100909437Imported, MGC125233Imported
    ORF Names:rCG_56769Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 4

    Organism-specific databases

    RGDi1561536. Cct8l1.
    6503574. LOC100909437.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-KW

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Expressioni

    Gene expression databases

    GenevestigatoriQ3B7U6.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000032192.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the TCP-1 chaperonin family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0459.
    GeneTreeiENSGT00550000074783.
    HOGENOMiHOG000131368.
    HOVERGENiHBG098338.
    InParanoidiQ3B7U6.
    OMAiQLCQDPR.
    OrthoDBiEOG77Q4WC.
    TreeFamiTF105699.

    Family and domain databases

    Gene3Di1.10.560.10. 2 hits.
    3.50.7.10. 1 hit.
    InterProiIPR017998. Chaperone_TCP-1.
    IPR002194. Chaperonin_TCP-1_CS.
    IPR002423. Cpn60/TCP-1.
    IPR027409. GroEL-like_apical_dom.
    IPR027413. GROEL-like_equatorial.
    [Graphical view]
    PANTHERiPTHR11353. PTHR11353. 1 hit.
    PfamiPF00118. Cpn60_TCP1. 1 hit.
    [Graphical view]
    PRINTSiPR00304. TCOMPLEXTCP1.
    SUPFAMiSSF48592. SSF48592. 2 hits.
    SSF52029. SSF52029. 1 hit.
    PROSITEiPS00750. TCP1_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3B7U6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAVSSSQVTQ TKVQSDLELP QRLKLGLEKN PESQGEEPLC ILRATAAAQT    50
    LASIIRSCYG PYGLQKFLVS AQGETVCTGH AAAILKALEL EHPAARFVQE 100
    LAQTQAENTG DGTAFVVLLT EALLEQAQYL LWAGLTPAQL REAFVTATAE 150
    VLTALPSLAI CSLGPLEDPS WALYSVMSTH TLSNAEYLTK LVAQACWISR 200
    EPNGSFKPES IVVCILQGGI LTDSRIIPGI AICGKLCGRK TEVLNDARVA 250
    LFNCPFGPSN PFAPATLRLS SPEELIRFRK QTEQVEMEIA ELAMMGINVA 300
    VVLGEVNERS VDQADYCGVM VIQVKSRKEI VYLSDKLGVP LLNRILPPLE 350
    PGKCHKVYRM EFGESALIMF EWEREIAPFL SVVLRGPTIQ GLRGAEQAVY 400
    YGIDAFSQLC QDPRLLPGAG ATEMALARML VDKGSRLDGP NGLAFQAFAQ 450
    ALSSLPKTLA ENAGLAAQSV LAEMSGYHQA GNFVIGVGTD GLVNVAQEGI 500
    WDILRTKAQG LQAVTGLVQQ LVTVDQIIVA RKTPRYRLIP QSAQNANTSS 550
    PLRAKFFGKY E 561
    Length:561
    Mass (Da):60,630
    Last modified:November 22, 2005 - v1
    Checksum:i6C53333EB1A25F26
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06028706 Genomic DNA. No translation available.
    BC107458 mRNA. Translation: AAI07459.1.
    CH474057 Genomic DNA. Translation: EDL86393.1.
    RefSeqiNP_001032883.1. NM_001037794.1.
    XP_006236031.1. XM_006235969.1.
    UniGeneiRn.125814.

    Genome annotation databases

    EnsembliENSRNOT00000073925; ENSRNOP00000067222; ENSRNOG00000050369.
    ENSRNOT00000074846; ENSRNOP00000066908; ENSRNOG00000047114.
    GeneIDi102553845.
    499967.
    KEGGirno:102553845.
    rno:499967.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06028706 Genomic DNA. No translation available.
    BC107458 mRNA. Translation: AAI07459.1 .
    CH474057 Genomic DNA. Translation: EDL86393.1 .
    RefSeqi NP_001032883.1. NM_001037794.1.
    XP_006236031.1. XM_006235969.1.
    UniGenei Rn.125814.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000032192.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000073925 ; ENSRNOP00000067222 ; ENSRNOG00000050369 .
    ENSRNOT00000074846 ; ENSRNOP00000066908 ; ENSRNOG00000047114 .
    GeneIDi 102553845.
    499967.
    KEGGi rno:102553845.
    rno:499967.

    Organism-specific databases

    CTDi 242891.
    RGDi 1561536. Cct8l1.
    6503574. LOC100909437.

    Phylogenomic databases

    eggNOGi COG0459.
    GeneTreei ENSGT00550000074783.
    HOGENOMi HOG000131368.
    HOVERGENi HBG098338.
    InParanoidi Q3B7U6.
    OMAi QLCQDPR.
    OrthoDBi EOG77Q4WC.
    TreeFami TF105699.

    Miscellaneous databases

    NextBioi 704594.

    Gene expression databases

    Genevestigatori Q3B7U6.

    Family and domain databases

    Gene3Di 1.10.560.10. 2 hits.
    3.50.7.10. 1 hit.
    InterProi IPR017998. Chaperone_TCP-1.
    IPR002194. Chaperonin_TCP-1_CS.
    IPR002423. Cpn60/TCP-1.
    IPR027409. GroEL-like_apical_dom.
    IPR027413. GROEL-like_equatorial.
    [Graphical view ]
    PANTHERi PTHR11353. PTHR11353. 1 hit.
    Pfami PF00118. Cpn60_TCP1. 1 hit.
    [Graphical view ]
    PRINTSi PR00304. TCOMPLEXTCP1.
    SUPFAMi SSF48592. SSF48592. 2 hits.
    SSF52029. SSF52029. 1 hit.
    PROSITEi PS00750. TCP1_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: TestisImported.
    2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    5. Ensembl
      Submitted (FEB-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiQ3B7U6_RAT
    AccessioniPrimary (citable) accession number: Q3B7U6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3