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Q3B6X2

- Q3B6X2_PELLD

UniProt

Q3B6X2 - Q3B6X2_PELLD

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Protein

Glycine--tRNA ligase

Gene

glyQS

Organism
Pelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273))
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the attachment of glycine to tRNA(Gly).UniRule annotationSAAS annotation

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei113 – 1131SubstrateUniRule annotation
Binding sitei202 – 2021SubstrateUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi234 – 2363ATPUniRule annotation
Nucleotide bindingi244 – 2496ATPUniRule annotation
Nucleotide bindingi317 – 3182ATPUniRule annotation
Nucleotide bindingi361 – 3644ATPUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. glycine-tRNA ligase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. glycyl-tRNA aminoacylation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetaseUniRule annotationSAAS annotation, Ligase

Keywords - Biological processi

Protein biosynthesisUniRule annotationSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciPLUT319225:GHDM-17-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligaseUniRule annotation (EC:6.1.1.14UniRule annotation)
Alternative name(s):
Glycyl-tRNA synthetaseUniRule annotation
Gene namesi
Name:glyQSUniRule annotation
Ordered Locus Names:Plut_0017Imported
OrganismiPelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273))Imported
Taxonomic identifieri319225 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupPelodictyon
ProteomesiUP000002709: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homodimer.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi319225.Plut_0017.

Structurei

3D structure databases

ProteinModelPortaliQ3B6X2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni249 – 2535Substrate bindingUniRule annotation
Regioni357 – 3615Substrate bindingUniRule annotation

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0423.
HOGENOMiHOG000242016.
KOiK01880.
OMAiYFPYVIE.
OrthoDBiEOG6R87F8.

Family and domain databases

Gene3Di3.40.50.800. 1 hit.
HAMAPiMF_00253_B. Gly_tRNA_synth_B.
InterProiIPR002314. aa-tRNA-synt_IIb_cons-dom.
IPR006195. aa-tRNA-synth_II.
IPR004154. Anticodon-bd.
IPR027031. Gly-tRNA_synthase/POLG2.
IPR022961. Gly_tRNA_ligase_bac.
IPR002315. tRNA-synt_gly.
[Graphical view]
PANTHERiPTHR10745. PTHR10745. 1 hit.
PfamiPF03129. HGTP_anticodon. 1 hit.
PF00587. tRNA-synt_2b. 1 hit.
[Graphical view]
PRINTSiPR01043. TRNASYNTHGLY.
SUPFAMiSSF52954. SSF52954. 1 hit.
TIGRFAMsiTIGR00389. glyS_dimeric. 1 hit.
PROSITEiPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3B6X2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTTPDTTRVQ GTSLSPDKVM HKLVSLAKRR GFIFPSSEIY GGLSSCFDYG
60 70 80 90 100
PLGSEMKRNI KELWWNAMTR RHQNIVGIDA SIMMNPTVWE ASGHVASFND
110 120 130 140 150
PMIDDRTTKR RYRADHLIEN HIEKLRRDGK DADALRVQMT YEACGASEEP
160 170 180 190 200
NRALYELIID EGIKAPDTGS GDWTEVRQFN LMFQCNMGAV ADSSGVVYLR
210 220 230 240 250
PETAQGIFVN FHNVRESSRM KVPFGIAQIG KAFRNEIVKG NFIFRMVEFE
260 270 280 290 300
QMEMQYFVKP GTQAEAFEAW REERYQWYTR QLGIRPEKLH WYKHDKLAHY
310 320 330 340 350
ADLAYDIKFE FPFGIEEIEG IHSRTDFDLS RHQEYSGKNM EYVDQVTNER
360 370 380 390 400
FIPYVVETSA GCDRLFLAIL SDAYSEDVVD GEERVVLKLA PKVAPVKAAV
410 420 430 440 450
LPLMKKGGMG EAAMKLRDEL AESFPVQYDD AASIGKRYRR QDEIGTPFCI
460 470 480
TVDHQSIEDG TVTVRFRDTA QQERIDMSQT AAFITAKMA
Length:489
Mass (Da):55,930
Last modified:November 22, 2005 - v1
Checksum:i2A90D33EA9A8A171
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000096 Genomic DNA. Translation: ABB22909.1.
RefSeqiWP_011356785.1. NC_007512.1.
YP_373952.1. NC_007512.1.

Genome annotation databases

EnsemblBacteriaiABB22909; ABB22909; Plut_0017.
GeneIDi3745723.
KEGGiplt:Plut_0017.
PATRICi21377432. VBIChlLut1287_0018.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000096 Genomic DNA. Translation: ABB22909.1 .
RefSeqi WP_011356785.1. NC_007512.1.
YP_373952.1. NC_007512.1.

3D structure databases

ProteinModelPortali Q3B6X2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 319225.Plut_0017.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABB22909 ; ABB22909 ; Plut_0017 .
GeneIDi 3745723.
KEGGi plt:Plut_0017.
PATRICi 21377432. VBIChlLut1287_0018.

Phylogenomic databases

eggNOGi COG0423.
HOGENOMi HOG000242016.
KOi K01880.
OMAi YFPYVIE.
OrthoDBi EOG6R87F8.

Enzyme and pathway databases

BioCyci PLUT319225:GHDM-17-MONOMER.

Family and domain databases

Gene3Di 3.40.50.800. 1 hit.
HAMAPi MF_00253_B. Gly_tRNA_synth_B.
InterProi IPR002314. aa-tRNA-synt_IIb_cons-dom.
IPR006195. aa-tRNA-synth_II.
IPR004154. Anticodon-bd.
IPR027031. Gly-tRNA_synthase/POLG2.
IPR022961. Gly_tRNA_ligase_bac.
IPR002315. tRNA-synt_gly.
[Graphical view ]
PANTHERi PTHR10745. PTHR10745. 1 hit.
Pfami PF03129. HGTP_anticodon. 1 hit.
PF00587. tRNA-synt_2b. 1 hit.
[Graphical view ]
PRINTSi PR01043. TRNASYNTHGLY.
SUPFAMi SSF52954. SSF52954. 1 hit.
TIGRFAMsi TIGR00389. glyS_dimeric. 1 hit.
PROSITEi PS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Pelodictyon luteolum DSM 273."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Bryant D., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 273Imported.

Entry informationi

Entry nameiQ3B6X2_PELLD
AccessioniPrimary (citable) accession number: Q3B6X2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: October 29, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3