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Q3B6X2

- Q3B6X2_PELLD

UniProt

Q3B6X2 - Q3B6X2_PELLD

Protein

Glycine--tRNA ligase

Gene

glyQS

Organism
Pelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273))
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    Catalyzes the attachment of glycine to tRNA(Gly).UniRule annotationSAAS annotation

    Catalytic activityi

    ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotationSAAS annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei113 – 1131SubstrateUniRule annotation
    Binding sitei202 – 2021SubstrateUniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi234 – 2363ATPUniRule annotation
    Nucleotide bindingi244 – 2496ATPUniRule annotation
    Nucleotide bindingi317 – 3182ATPUniRule annotation
    Nucleotide bindingi361 – 3644ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. glycine-tRNA ligase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. glycyl-tRNA aminoacylation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetaseUniRule annotationSAAS annotationImported, Ligase

    Keywords - Biological processi

    Protein biosynthesisUniRule annotationSAAS annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotationSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciPLUT319225:GHDM-17-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycine--tRNA ligaseUniRule annotation (EC:6.1.1.14UniRule annotation)
    Alternative name(s):
    Glycyl-tRNA synthetaseUniRule annotation
    Gene namesi
    Name:glyQSUniRule annotation
    Ordered Locus Names:Plut_0017Imported
    OrganismiPelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273))Imported
    Taxonomic identifieri319225 [NCBI]
    Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupPelodictyon
    ProteomesiUP000002709: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homodimer.UniRule annotationSAAS annotation

    Protein-protein interaction databases

    STRINGi319225.Plut_0017.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3B6X2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni249 – 2535Substrate bindingUniRule annotation
    Regioni357 – 3615Substrate bindingUniRule annotation

    Sequence similaritiesi

    Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0423.
    HOGENOMiHOG000242016.
    KOiK01880.
    OMAiYFPYVIE.
    OrthoDBiEOG6R87F8.

    Family and domain databases

    Gene3Di3.40.50.800. 1 hit.
    HAMAPiMF_00253_B. Gly_tRNA_synth_B.
    InterProiIPR002314. aa-tRNA-synt_IIb_cons-dom.
    IPR006195. aa-tRNA-synth_II.
    IPR004154. Anticodon-bd.
    IPR027031. Gly-tRNA_synthase/POLG2.
    IPR022961. Gly_tRNA_ligase_bac.
    IPR002315. tRNA-synt_gly.
    [Graphical view]
    PANTHERiPTHR10745. PTHR10745. 1 hit.
    PfamiPF03129. HGTP_anticodon. 1 hit.
    PF00587. tRNA-synt_2b. 1 hit.
    [Graphical view]
    PRINTSiPR01043. TRNASYNTHGLY.
    SUPFAMiSSF52954. SSF52954. 1 hit.
    TIGRFAMsiTIGR00389. glyS_dimeric. 1 hit.
    PROSITEiPS50862. AA_TRNA_LIGASE_II. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3B6X2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTTPDTTRVQ GTSLSPDKVM HKLVSLAKRR GFIFPSSEIY GGLSSCFDYG    50
    PLGSEMKRNI KELWWNAMTR RHQNIVGIDA SIMMNPTVWE ASGHVASFND 100
    PMIDDRTTKR RYRADHLIEN HIEKLRRDGK DADALRVQMT YEACGASEEP 150
    NRALYELIID EGIKAPDTGS GDWTEVRQFN LMFQCNMGAV ADSSGVVYLR 200
    PETAQGIFVN FHNVRESSRM KVPFGIAQIG KAFRNEIVKG NFIFRMVEFE 250
    QMEMQYFVKP GTQAEAFEAW REERYQWYTR QLGIRPEKLH WYKHDKLAHY 300
    ADLAYDIKFE FPFGIEEIEG IHSRTDFDLS RHQEYSGKNM EYVDQVTNER 350
    FIPYVVETSA GCDRLFLAIL SDAYSEDVVD GEERVVLKLA PKVAPVKAAV 400
    LPLMKKGGMG EAAMKLRDEL AESFPVQYDD AASIGKRYRR QDEIGTPFCI 450
    TVDHQSIEDG TVTVRFRDTA QQERIDMSQT AAFITAKMA 489
    Length:489
    Mass (Da):55,930
    Last modified:November 22, 2005 - v1
    Checksum:i2A90D33EA9A8A171
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000096 Genomic DNA. Translation: ABB22909.1.
    RefSeqiYP_373952.1. NC_007512.1.

    Genome annotation databases

    EnsemblBacteriaiABB22909; ABB22909; Plut_0017.
    GeneIDi3745723.
    KEGGiplt:Plut_0017.
    PATRICi21377432. VBIChlLut1287_0018.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000096 Genomic DNA. Translation: ABB22909.1 .
    RefSeqi YP_373952.1. NC_007512.1.

    3D structure databases

    ProteinModelPortali Q3B6X2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 319225.Plut_0017.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABB22909 ; ABB22909 ; Plut_0017 .
    GeneIDi 3745723.
    KEGGi plt:Plut_0017.
    PATRICi 21377432. VBIChlLut1287_0018.

    Phylogenomic databases

    eggNOGi COG0423.
    HOGENOMi HOG000242016.
    KOi K01880.
    OMAi YFPYVIE.
    OrthoDBi EOG6R87F8.

    Enzyme and pathway databases

    BioCyci PLUT319225:GHDM-17-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.800. 1 hit.
    HAMAPi MF_00253_B. Gly_tRNA_synth_B.
    InterProi IPR002314. aa-tRNA-synt_IIb_cons-dom.
    IPR006195. aa-tRNA-synth_II.
    IPR004154. Anticodon-bd.
    IPR027031. Gly-tRNA_synthase/POLG2.
    IPR022961. Gly_tRNA_ligase_bac.
    IPR002315. tRNA-synt_gly.
    [Graphical view ]
    PANTHERi PTHR10745. PTHR10745. 1 hit.
    Pfami PF03129. HGTP_anticodon. 1 hit.
    PF00587. tRNA-synt_2b. 1 hit.
    [Graphical view ]
    PRINTSi PR01043. TRNASYNTHGLY.
    SUPFAMi SSF52954. SSF52954. 1 hit.
    TIGRFAMsi TIGR00389. glyS_dimeric. 1 hit.
    PROSITEi PS50862. AA_TRNA_LIGASE_II. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Pelodictyon luteolum DSM 273."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Bryant D., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
      Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 273Imported.

    Entry informationi

    Entry nameiQ3B6X2_PELLD
    AccessioniPrimary (citable) accession number: Q3B6X2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3