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Q3B5D1 (PDAD_PELLD) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable pyruvoyl-dependent arginine decarboxylase
Short name=PvlArgDC
EC=4.1.1.19

Cleaved into the following 2 chains:

  1. Pyruvoyl-dependent arginine decarboxylase subunit beta
  2. Pyruvoyl-dependent arginine decarboxylase subunit alpha
Gene names
Name:pdaD
Ordered Locus Names:Plut_0567
OrganismPelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273)) [Complete proteome] [HAMAP]
Taxonomic identifier319225 [NCBI]
Taxonomic lineageBacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Pelodictyon

Protein attributes

Sequence length181 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-arginine = agmatine + CO2. HAMAP MF_01404

Cofactor

Pyruvoyl group By similarity. HAMAP MF_01404

Sequence similarities

Belongs to the pdaD family.

Ontologies

Keywords
   LigandPyruvate
   Molecular functionDecarboxylase
Lyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processarginine catabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionarginine decarboxylase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 4242Pyruvoyl-dependent arginine decarboxylase subunit beta By similarity
PRO_1000068401
Chain43 – 181139Pyruvoyl-dependent arginine decarboxylase subunit alpha By similarity
PRO_1000068402

Sites

Site42 – 432Cleavage (non-hydrolytic) By similarity

Amino acid modifications

Modified residue431Pyruvic acid (Ser) By similarity

Sequences

Sequence LengthMass (Da)Tools
Q3B5D1 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 7C61194128C950C0

FASTA18119,988
        10         20         30         40         50         60 
MSFVPSKVFF TKGVGRHKEY LSSFELALRD AKIEKCNLVT VSSIFPPKCE RVSVEEGVKM 

        70         80         90        100        110        120 
LTPGQITFAV MARNSTNEYN RLIAASIGVA IPADDTQYGY LSEHHPFGED AEQSGEYAED 

       130        140        150        160        170        180 
LAATMLATTL GIEFDPNKDW DEREGIYKMS GKIINSYNIT QSAEGENGMW TTVISCAVLL 


P

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References

[1]"Complete sequence of Pelodictyon luteolum DSM 273."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Bryant D., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 273.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000096 Genomic DNA. Translation: ABB23450.1.
RefSeqYP_374493.1. NC_007512.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ3B5D1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3744562.
GenomeReviewsGene locus Plut_0567 in contig CP000096_GR.
KEGGplt:Plut_0567.
NMPDRfig|319225.3.peg.640.
PATRIC21378624. VBIChlLut1287_0590.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1945.
HOGENOMHBG539680.
OMAYKMSGKI.
ProtClustDBPRK01285.

Enzyme and pathway databases

BioCycPLUT319225:PLUT_0567-MONOMER.

Family and domain databases

HAMAPMF_01404. PvlArgDC.
[Tree]
InterProIPR016104. Pyr-dep_his/arg-deCO2ase.
IPR016105. Pyr-dep_his/arg-deCO2ase_sand.
IPR002724. Pyruvoyl-dep_arg_deCO2ase.
[Graphical view]
Gene3DG3DSA:3.50.20.10. Pyr-dep_his/arg-deCO2ase_sand. 1 hit.
KOK02626.
PfamPF01862. PvlArgDC. 1 hit.
[Graphical view]
PIRSFPIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
ProDomPD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF56271. His_carbxylase. 1 hit.
TIGRFAMsTIGR00286. TIGR00286. 1 hit.
ProtoNetSearch...

Entry information

Entry namePDAD_PELLD
AccessionPrimary (citable) accession number: Q3B5D1
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: November 22, 2005
Last modified: January 25, 2012
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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