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Q3B147 (SYR_PELLD) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase

EC=6.1.1.19
Alternative name(s):
Arginyl-tRNA synthetase
Short name=ArgRS
Gene names
Name:argS
Ordered Locus Names:Plut_2092
OrganismPelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273)) [Complete proteome] [HAMAP]
Taxonomic identifier319225 [NCBI]
Taxonomic lineageBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupPelodictyon

Protein attributes

Sequence length552 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP-Rule MF_00123

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00123

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 552552Arginine--tRNA ligase HAMAP-Rule MF_00123
PRO_0000242063

Regions

Motif123 – 13311"HIGH" region HAMAP-Rule MF_00123

Sequences

Sequence LengthMass (Da)Tools
Q3B147 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 3D51F4B30957F30F

FASTA55261,921
        10         20         30         40         50         60 
MQSFLVAEIQ NALRSASVTT GQSIIIEKPT SPKFGDYATN IAFLAAKELK RNPRQLAEEL 

        70         80         90        100        110        120 
TGHFRFPEGT VTKTEVAGPG FINFFMEPAF IMQSAERVFR EGAEYGKGRE GQGKTAIVEY 

       130        140        150        160        170        180 
VSANPTGPLT IGRGRGGVLG DCIANLAEAQ GYHVNREYYF NDAGRQMQIL GESVRYRYME 

       190        200        210        220        230        240 
LCGRTIDFPD THYKGGYIGE IAEKIHSEHG EDLLHVESIE PFRSEAESII FSSIQKTLGR 

       250        260        270        280        290        300 
LGIVHDSFFN EHTLYTADLN GISPNQNVID RLREKGFIGE YDGATWFLTT KLGQEKDKVL 

       310        320        330        340        350        360 
IKSSGEPSYR LPDIAYHVTK YARGFDMIIN VFGADHIDEY PDVLEALKIL GHDTAHVRIA 

       370        380        390        400        410        420 
INQFVTTTVN GETVKMSTRK GNADLLDDLI DDVGPDATRL FFIMRSKDSH LNFDVELAKK 

       430        440        450        460        470        480 
QSKDNPVFYL QYAHARICSL LRLAWSEIGF DAAKRPEPGV LMRLTTPEEL QLAFGILDFG 

       490        500        510        520        530        540 
EASRSAFRML EPQKMVDYMH SIAELFHRFY QECPILKAEP EIAEARLFLA VAVRQVLQNG 

       550 
FRILGISAPE SM 

« Hide

References

[1]"Complete sequence of Pelodictyon luteolum DSM 273."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Bryant D., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 273.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000096 Genomic DNA. Translation: ABB24934.1.
RefSeqYP_375977.1. NC_007512.1.

3D structure databases

ProteinModelPortalQ3B147.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING319225.Plut_2092.

Proteomic databases

PRIDEQ3B147.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABB24934; ABB24934; Plut_2092.
GeneID3744826.
KEGGplt:Plut_2092.
PATRIC21381850. VBIChlLut1287_2173.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHOG000247214.
KOK01887.
OMAMEHMGFG.
OrthoDBEOG6JB13C.

Enzyme and pathway databases

BioCycPLUT319225:GHDM-2095-MONOMER.

Family and domain databases

Gene3D1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPMF_00123. Arg_tRNA_synth.
InterProIPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERPTHR11956. PTHR11956. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsTIGR00456. argS. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSYR_PELLD
AccessionPrimary (citable) accession number: Q3B147
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: November 22, 2005
Last modified: May 14, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries