Q3B106 (Q3B106_PELLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Chromosomal replication initiator protein DnaA HAMAP MF_00377

Gene names

Name:	dnaA HAMAP MF_00377
Ordered Locus Names:	Plut_2133

Organism

Pelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273)) [Complete proteome] [HAMAP]

Taxonomic identifier

319225 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Pelodictyon

Protein attributes

Sequence length	489 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids By similarity. HAMAP MF_00377 RuleBase RU000577
Subcellular location	Cytoplasm By similarity HAMAP MF_00377.
Sequence similarities	Belongs to the DnaA family. HAMAP MF_00377 RuleBase RU004227

Ontologies

Keywords
Biological process	DNA replication HAMAP MF_00377 RuleBase RU000577
Cellular component	Cytoplasm HAMAP MF_00377
Ligand	ATP-binding HAMAP MF_00377 RuleBase RU000577 DNA-binding HAMAP MF_00377 RuleBase RU000577 Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA-dependent DNA replication initiation Inferred from electronic annotation. Source: HAMAP regulation of DNA replication Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP DNA replication origin binding Inferred from electronic annotation. Source: HAMAP nucleoside-triphosphatase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Nucleotide binding	191 – 198	8	ATP By similarity HAMAP MF_00377

Sequences

	Sequence		Length	Mass (Da)
	Q3B106 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: F318F2524D5DFCBD	FASTA	489	55,680
	10 20 30 40 50 60 MLYADTMTLP EKQDTRHRNN DSIEQKVWSS CLDAIREHIN PLAFQTWFSP IRPLDYSGNQ 70 80 90 100 110 120 LTIQVPSTFF YEWIEEHYSQ FLKEALRDVI GPEARLMYSI VMDKSQGQPV TMQLPPQNVQ 130 140 150 160 170 180 AEKKAEIFQK DGGKADRAFE RDVERFETHL NSKYTFDTLI RGDCNSLAFA AAKSVAQNPG 190 200 210 220 230 240 QNAFNPLVIY GGVGLGKTHI MQAIGNTVRE SRDASKVLYV SSEKFAIDFV NAIQNGKIQE 250 260 270 280 290 300 FSSFYRNIDV LIIDDIQFFS GKEKTQEEIF HIFNTLHQSN KQIILSADRP IKDIKGIEDR 310 320 330 340 350 360 LISRFNWGLS ADIQPPDYET RKAIILSKLH QSGVNFDENV IEFIANNVTD NVRELEGCIV 370 380 390 400 410 420 KLLAAQSLDK REIDLQFTKS TLKDIIRHTT KQLNLDTIEK AVCEYFSITS NDLKGKSKKK 430 440 450 460 470 480 EISVGRQIAM YLSKQMTDSS LKTIGLHFGG RDHSTVIHAI NTIAKKVDSG GEDRGKIDEI RRRIEIISM

References

[1]

"Complete sequence of Pelodictyon luteolum DSM 273." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Bryant D., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 273.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000096 Genomic DNA. Translation: ABB24975.1.
RefSeq	YP_376018.1. NC_007512.1.
3D structure databases
ProteinModelPortal	Q3B106.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3B106.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3745124.
GenomeReviews	Gene locus Plut_2133 in contig CP000096_GR.
KEGG	plt:Plut_2133.
NMPDR	fig|319225.3.peg.1901.
PATRIC	21381934. VBIChlLut1287_2214.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0593.
HOGENOM	HBG695666.
OMA	CHTLNAL.
PhylomeDB	Q3B106.
ProtClustDB	PRK00149.
Enzyme and pathway databases
BioCyc	PLUT319225:PLUT_2133-MONOMER.
Family and domain databases
HAMAP	MF_00377. DnaA_bact. [Tree]
InterPro	IPR003593. ATPase_AAA+_core. IPR001957. Chromosome_initiator_DnaA. IPR020591. Chromosome_initiator_DnaA-like. IPR018312. Chromosome_initiator_DnaA_CS. IPR013159. DnaA_C. IPR013317. DnaA_Hda. IPR010921. Trp_repressor/repl_initiator. [Graphical view]
Gene3D	G3DSA:1.10.1750.10. DnaA_C. 1 hit.
KO	K02313.
Pfam	PF00308. Bac_DnaA. 1 hit. PF08299. Bac_DnaA_C. 1 hit. [Graphical view]
PRINTS	PR00051. DNAA.
SMART	SM00382. AAA. 1 hit. SM00760. Bac_DnaA_C. 1 hit. [Graphical view]
SUPFAM	SSF48295. Trp_repress_rep. 1 hit.
TIGRFAMs	TIGR00362. DnaA. 1 hit.
PROSITE	PS01008. DNAA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3B106_PELLD

Accession

Primary (citable) accession number: Q3B106

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	December 14, 2011
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)