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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

Syncc9902_1040

Organism
Synechococcus sp. (strain CC9902)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSP316279:GJCI-1050-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Syncc9902_1040Imported
OrganismiSynechococcus sp. (strain CC9902)Imported
Taxonomic identifieri316279 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000002712 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316279.Syncc9902_1040.

Structurei

3D structure databases

ProteinModelPortaliQ3AY23.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3AY23-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQAFQALFQQ LDQVTGTRAK VGLLVEHFRS VPAADAAWAL VLLLGKRRRR
60 70 80 90 100
LITGRRLRTI LEQRGGIPEW LVAECHGQVG DSAETITLLW PAVSTKIGLV
110 120 130 140 150
ESNLPTLPVD QPLHWWMDTL LPTISGFKDD NEANAVLDLW QRVPNDQHFV
160 170 180 190 200
VNKLITGGFR VGVSTGLISR AIAEAFDLDI ELVVQRLMGG FEPTADNFQQ
210 220 230 240 250
LILPANDDEQ RSKGTPYPFF LASPIDLHRL QDSKPDDWLV EWKWDGIRGQ
260 270 280 290 300
LIHRGHGTFL WSRGEELVND SFPELISIGE ALPDGTVLDG EVICWKEEDS
310 320 330 340 350
IPLGFDQLQR RLGRKQVGNI LKRECPVRFI AYDLLEHKGQ DIRQEPISQR
360 370 380 390 400
QQKLLEVIRT LKHPEHWRLQ QSQHWPLKTW DELDRQRQEA RKKHAEGLML
410 420 430 440 450
KQRTSPYLAG RKRGSWWKYK LDPMNLDAVL LYAQAGRGRR ANLFTDYTFG
460 470 480 490 500
LWNNSETPEL VTFAKAYSGL DNAEILELDR WIRKNTLQRF GPTRSVRPEQ
510 520 530 540 550
VFELGFEGIH PSKRHKAGVA VRFPRILRWR KDKTAQEGNC LSDAKQLMND

QREA
Length:554
Mass (Da):63,671
Last modified:November 22, 2005 - v1
Checksum:i35EAC6B726C471C5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000097 Genomic DNA. Translation: ABB26004.1.
RefSeqiWP_011359837.1. NC_007513.1.
YP_377048.1. NC_007513.1.

Genome annotation databases

EnsemblBacteriaiABB26004; ABB26004; Syncc9902_1040.
KEGGisye:Syncc9902_1040.
PATRICi23799393. VBISynSp76179_1158.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000097 Genomic DNA. Translation: ABB26004.1.
RefSeqiWP_011359837.1. NC_007513.1.
YP_377048.1. NC_007513.1.

3D structure databases

ProteinModelPortaliQ3AY23.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316279.Syncc9902_1040.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB26004; ABB26004; Syncc9902_1040.
KEGGisye:Syncc9902_1040.
PATRICi23799393. VBISynSp76179_1158.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciSSP316279:GJCI-1050-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Synechococcus sp. CC9902."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CC9902Imported.

Entry informationi

Entry nameiQ3AY23_SYNS9
AccessioniPrimary (citable) accession number: Q3AY23
Entry historyi
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: April 1, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.