Q3AY23 (Q3AY23_SYNS9) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase EMBL ABB26004.1

Gene names

Ordered Locus Names:

Syncc9902_1040

Organism

Synechococcus sp. (strain CC9902) [Complete proteome] [HAMAP] EMBL ABB26004.1

Taxonomic identifier

316279 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechococcus

Protein attributes

Sequence length	554 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABB26004.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3AY23 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: 35EAC6B726C471C5	FASTA	554	63,671
	10 20 30 40 50 60 MQAFQALFQQ LDQVTGTRAK VGLLVEHFRS VPAADAAWAL VLLLGKRRRR LITGRRLRTI 70 80 90 100 110 120 LEQRGGIPEW LVAECHGQVG DSAETITLLW PAVSTKIGLV ESNLPTLPVD QPLHWWMDTL 130 140 150 160 170 180 LPTISGFKDD NEANAVLDLW QRVPNDQHFV VNKLITGGFR VGVSTGLISR AIAEAFDLDI 190 200 210 220 230 240 ELVVQRLMGG FEPTADNFQQ LILPANDDEQ RSKGTPYPFF LASPIDLHRL QDSKPDDWLV 250 260 270 280 290 300 EWKWDGIRGQ LIHRGHGTFL WSRGEELVND SFPELISIGE ALPDGTVLDG EVICWKEEDS 310 320 330 340 350 360 IPLGFDQLQR RLGRKQVGNI LKRECPVRFI AYDLLEHKGQ DIRQEPISQR QQKLLEVIRT 370 380 390 400 410 420 LKHPEHWRLQ QSQHWPLKTW DELDRQRQEA RKKHAEGLML KQRTSPYLAG RKRGSWWKYK 430 440 450 460 470 480 LDPMNLDAVL LYAQAGRGRR ANLFTDYTFG LWNNSETPEL VTFAKAYSGL DNAEILELDR 490 500 510 520 530 540 WIRKNTLQRF GPTRSVRPEQ VFELGFEGIH PSKRHKAGVA VRFPRILRWR KDKTAQEGNC 550 LSDAKQLMND QREA

References

[1]

"Complete sequence of Synechococcus sp. CC9902." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CC9902.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000097 Genomic DNA. Translation: ABB26004.1.
RefSeq	YP_377048.1. NC_007513.1.
3D structure databases
ProteinModelPortal	Q3AY23.
ModBase	Search...
Protein-protein interaction databases
STRING	316279.Syncc9902_1040.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABB26004; ABB26004; Syncc9902_1040.
GeneID	3743195.
KEGG	sye:Syncc9902_1040.
PATRIC	23799393. VBISynSp76179_1158.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3AY23_SYNS9

Accession

Primary (citable) accession number: Q3AY23

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	May 1, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)