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Q3AY23

- Q3AY23_SYNS9

UniProt

Q3AY23 - Q3AY23_SYNS9

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

Syncc9902_1040

Organism
Synechococcus sp. (strain CC9902)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSSP316279:GJCI-1050-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Syncc9902_1040Imported
    OrganismiSynechococcus sp. (strain CC9902)Imported
    Taxonomic identifieri316279 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
    ProteomesiUP000002712: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi316279.Syncc9902_1040.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3AY23.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiKSASTHN.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3AY23-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQAFQALFQQ LDQVTGTRAK VGLLVEHFRS VPAADAAWAL VLLLGKRRRR    50
    LITGRRLRTI LEQRGGIPEW LVAECHGQVG DSAETITLLW PAVSTKIGLV 100
    ESNLPTLPVD QPLHWWMDTL LPTISGFKDD NEANAVLDLW QRVPNDQHFV 150
    VNKLITGGFR VGVSTGLISR AIAEAFDLDI ELVVQRLMGG FEPTADNFQQ 200
    LILPANDDEQ RSKGTPYPFF LASPIDLHRL QDSKPDDWLV EWKWDGIRGQ 250
    LIHRGHGTFL WSRGEELVND SFPELISIGE ALPDGTVLDG EVICWKEEDS 300
    IPLGFDQLQR RLGRKQVGNI LKRECPVRFI AYDLLEHKGQ DIRQEPISQR 350
    QQKLLEVIRT LKHPEHWRLQ QSQHWPLKTW DELDRQRQEA RKKHAEGLML 400
    KQRTSPYLAG RKRGSWWKYK LDPMNLDAVL LYAQAGRGRR ANLFTDYTFG 450
    LWNNSETPEL VTFAKAYSGL DNAEILELDR WIRKNTLQRF GPTRSVRPEQ 500
    VFELGFEGIH PSKRHKAGVA VRFPRILRWR KDKTAQEGNC LSDAKQLMND 550
    QREA 554
    Length:554
    Mass (Da):63,671
    Last modified:November 22, 2005 - v1
    Checksum:i35EAC6B726C471C5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000097 Genomic DNA. Translation: ABB26004.1.
    RefSeqiWP_011359837.1. NC_007513.1.
    YP_377048.1. NC_007513.1.

    Genome annotation databases

    EnsemblBacteriaiABB26004; ABB26004; Syncc9902_1040.
    GeneIDi3743195.
    KEGGisye:Syncc9902_1040.
    PATRICi23799393. VBISynSp76179_1158.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000097 Genomic DNA. Translation: ABB26004.1 .
    RefSeqi WP_011359837.1. NC_007513.1.
    YP_377048.1. NC_007513.1.

    3D structure databases

    ProteinModelPortali Q3AY23.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316279.Syncc9902_1040.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABB26004 ; ABB26004 ; Syncc9902_1040 .
    GeneIDi 3743195.
    KEGGi sye:Syncc9902_1040.
    PATRICi 23799393. VBISynSp76179_1158.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi KSASTHN.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci SSP316279:GJCI-1050-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Synechococcus sp. CC9902."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
      Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CC9902Imported.

    Entry informationi

    Entry nameiQ3AY23_SYNS9
    AccessioniPrimary (citable) accession number: Q3AY23
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3