Q3AVS8 (Q3AVS8_SYNS9) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Possible type II alternative RNA polymerase sigma factor EMBL ABB27192.1

Gene names

Ordered Locus Names:

Syncc9902_2234

Organism

Synechococcus sp. (strain CC9902) [Complete proteome] [HAMAP] EMBL ABB27192.1

Taxonomic identifier

316279 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	377 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3AVS8 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: 9B8529D349C0084E	FASTA	377	43,504
	10 20 30 40 50 60 MPRLPRRTGE TRSRRSSGTA DLLRLYLQDI GRVDLLTSEE EVTLARLVQR RETLLKQQRE 70 80 90 100 110 120 LSDTNQAIGE LHRLEELQRR EANHHSHWPT KQEWARAAAL TLQELQNRID AGYEAWAEKA 130 140 150 160 170 180 AIDAKELKLS LRNGRRAKDH MIQANLRLVV AVAKKYQQRG MEILDLVQEG TLGLERAVEK 190 200 210 220 230 240 FDPTRGFRFS TYAYWWIRQG MTRAIATQSR TIRLPVHVTE KLNRIKRVQQ EIASNEGRIA 250 260 270 280 290 300 SIADLARELG ISEDTVRQTL ERVPRSVSLD SRVGKDQDTQ LGDLIEDGKA TPEETLTHDE 310 320 330 340 350 360 LHNDLEGLLD ELTPREASVL RRRFGLEDDT PQTLAQIGEE LKLSRERVRQ IETRALLKLR 370 QPQKRSKIRD YIQGLDS

References

[1]

"Complete sequence of Synechococcus sp. CC9902." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Martinez M., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000097 Genomic DNA. Translation: ABB27192.1.
RefSeq	YP_378235.1. NC_007513.1.
3D structure databases
ProteinModelPortal	Q3AVS8.
SMR	Q3AVS8. Positions 128-208.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3AVS8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3743486.
GenomeReviews	Gene locus Syncc9902_2234 in contig CP000097_GR.
KEGG	sye:Syncc9902_2234.
PATRIC	23802073. VBISynSp76179_2466.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q3AVS8.
ProtClustDB	CLSK826321.
Enzyme and pathway databases
BioCyc	SSP1131-1:SYNCC9902_2234-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3AVS8_SYNS9

Accession

Primary (citable) accession number: Q3AVS8

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	January 25, 2012
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)