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Protein
Submitted name:

Type II restriction endonuclease TdeIII

Gene

Cag_0333

Organism
Chlorobium chlorochromatii (strain CaD3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. Type II site-specific deoxyribonuclease activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA restriction-modification system Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

EndonucleaseImported, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciCCHL340177:GHBW-337-MONOMER.

Protein family/group databases

REBASEi11466. CchORF332P.

Names & Taxonomyi

Protein namesi
Submitted name:
Type II restriction endonuclease TdeIIIImported (EC:3.1.21.4Imported)
Gene namesi
Ordered Locus Names:Cag_0333Imported
OrganismiChlorobium chlorochromatii (strain CaD3)Imported
Taxonomic identifieri340177 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobium/Pelodictyon groupChlorobium
ProteomesiUP000002708: Chromosome

Family & Domainsi

Phylogenomic databases

eggNOGiNOG136805.
HOGENOMiHOG000062723.
KOiK01155.
OMAiLLGKDRM.
OrthoDBiEOG610421.

Family and domain databases

InterProiIPR019045. Restrct_endonuc_II_TdeIII.
[Graphical view]
PfamiPF09520. RE_TdeIII. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3ATR9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSLNQQQIQK VETVLRNSLR HKFQNYNPEP AVMPFHTRLL GKDRMALFSF
60 70 80 90 100
IHSLNTNFGT TIFEPVAQAL ALSRFGSVEL QKVAGNQISL QAQQVIQEIM
110 120 130 140 150
DGLTTATNLP CKSQEIEAIR AVCQSGEMRK VKPTKVDVKL ISYDGTLFLI
160 170 180 190 200
DIKTAKPNKG GFQEFKRTLL EWVAVTLATN PEATIETFIA IPYNPYEPKP
210 220 230 240 250
YSRWTMRGML DLEAELKVAE EFWDFLGGEG TYPQLLDCFE RVGCELRSEI
260
DAYFAQYINS
Length:260
Mass (Da):29,527
Last modified:November 22, 2005 - v1
Checksum:i8BFEF1AFDCDB4490
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000108 Genomic DNA. Translation: ABB27606.1.
RefSeqiYP_378649.1. NC_007514.1.

Genome annotation databases

EnsemblBacteriaiABB27606; ABB27606; Cag_0333.
GeneIDi3748053.
KEGGicch:Cag_0333.
PATRICi21368235. VBIChlChl46571_0348.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000108 Genomic DNA. Translation: ABB27606.1.
RefSeqiYP_378649.1. NC_007514.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

REBASEi11466. CchORF332P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB27606; ABB27606; Cag_0333.
GeneIDi3748053.
KEGGicch:Cag_0333.
PATRICi21368235. VBIChlChl46571_0348.

Phylogenomic databases

eggNOGiNOG136805.
HOGENOMiHOG000062723.
KOiK01155.
OMAiLLGKDRM.
OrthoDBiEOG610421.

Enzyme and pathway databases

BioCyciCCHL340177:GHBW-337-MONOMER.

Family and domain databases

InterProiIPR019045. Restrct_endonuc_II_TdeIII.
[Graphical view]
PfamiPF09520. RE_TdeIII. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Chlorobium chlorochromatii CaD3."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Bryant D., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CaD3Imported.

Entry informationi

Entry nameiQ3ATR9_CHLCH
AccessioniPrimary (citable) accession number: Q3ATR9
Entry historyi
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: February 4, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.