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Q3ATB4 (Q3ATB4_CHLCH) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase HAMAP MF_00163
Short name=PDF HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase HAMAP MF_00163
Gene names
Name:def HAMAP MF_00163
Ordered Locus Names:Cag_0488
OrganismChlorobium chlorochromatii (strain CaD3) [Complete proteome] [HAMAP]
Taxonomic identifier340177 [NCBI]
Taxonomic lineageBacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Chlorobium

Protein attributes

Sequence length199 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163 RuleBase RU003335

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1481 By similarity HAMAP MF_00163
Metal binding1051Iron By similarity HAMAP MF_00163
Metal binding1471Iron By similarity HAMAP MF_00163
Metal binding1511Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q3ATB4 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 84DA539B37412222

FASTA19922,271
        10         20         30         40         50         60 
MLFARRSAQH HMILPITIYS HEVLRQKAKP LKGVDKEIET LIAAMFESMH NASGIGLAAP 

        70         80         90        100        110        120 
QVGRSLRLLV LDVSCLKNYK DEKPMVVINP HILSVRGACA MEEGCLSVPG VQGDVVRPSA 

       130        140        150        160        170        180 
ITMKYRNERF EELTAEFSGM VARVLQHEID HLDGKLFVDR MDKRDKRKIQ HELNELTAGH 

       190 
ISADYPVELH PATTASHAE

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References

[1]"Complete sequence of Chlorobium chlorochromatii CaD3."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Bryant D., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CaD3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000108 Genomic DNA. Translation: ABB27761.1.
RefSeqYP_378804.1. NC_007514.1.

3D structure databases

ProteinModelPortalQ3ATB4.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ3ATB4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3746357.
GenomeReviewsGene locus Cag_0488 in contig CP000108_GR.
KEGGcch:Cag_0488.
PATRIC21368573. VBIChlChl46571_0510.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMARITKVDE.
PhylomeDBQ3ATB4.
ProtClustDBPRK14598.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ3ATB4_CHLCH
AccessionPrimary (citable) accession number: Q3ATB4
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: December 14, 2011
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info