Q3AGS8 (Q3AGS8_SYNSC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Transcription antitermination protein nusG RuleBase RU000538

Gene names

Ordered Locus Names:

Syncc9605_2472

Organism

Synechococcus sp. (strain CC9605) [Complete proteome] [HAMAP]

Taxonomic identifier

110662 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	222 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Influences transcription termination and antitermination. Acts as a component of the transcription complex, and interacts with the termination factor rho and RNA polymerase By similarity. SAAS SAAS006645 RuleBase RU000538
Sequence similarities	Belongs to the nusG family. RuleBase RU003559

Ontologies

Keywords
Biological process	Transcription Transcription antitermination SAAS SAAS006645 RuleBase RU000538 Transcription regulation Transcription termination SAAS SAAS006645 RuleBase RU000538
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	positive regulation of transcription elongation from RNA polymerase II promoter Inferred from electronic annotation. Source: InterPro transcription antitermination Inferred from electronic annotation. Source: UniProtKB-KW transcription termination, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3AGS8 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: 597B919E4423EC2E	FASTA	222	24,398
	10 20 30 40 50 60 MPDDLTTPDA PEVLDLPAPN EGEDSTLPAA AVANTAIARW YAVQVASSCE KKVKATLEQR 70 80 90 100 110 120 AVTLGVSNRI LEIEIPQTPA VKLKKDGTRQ STEEKVFPGY VLVRMVLDED TMMAVRSTPN 130 140 150 160 170 180 VINFVGAEDR RATGKARGHI KPRPLSRSEV DRIFKRAAEK KTVVKVDLTE GDQILVTAGP 190 200 210 220 FKDFQGEVIE VSGERNKLKA LLSIFGRETP VELEFSQISK QN

References

[1]

"Complete sequence of Synechococcus sp. CC9605." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Schmutz J., Martinez M., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P. Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CC9605.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000110 Genomic DNA. Translation: ABB36204.1.
RefSeq	YP_382759.1. NC_007516.1.
3D structure databases
ProteinModelPortal	Q3AGS8.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3AGS8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3737876.
GenomeReviews	Gene locus Syncc9605_2472 in contig CP000110_GR.
KEGG	syd:Syncc9605_2472.
NMPDR	fig|110662.3.peg.1102.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0250.
HOGENOM	HBG751162.
OMA	VASGCEK.
PhylomeDB	Q3AGS8.
ProtClustDB	PRK05609.
Enzyme and pathway databases
BioCyc	SSP1131:SYNCC9605_2472-MONOMER.
Family and domain databases
InterPro	IPR005824. KOW. IPR001062. Transcrpt_antiterm_NusG. IPR015869. Transcrpt_antiterm_NusG_bac_CS. IPR006645. Transcrpt_antiterm_NusG_N. IPR014722. Transl_SH3-like_sub. IPR008991. Translation_prot_SH3-like. [Graphical view]
Gene3D	G3DSA:2.30.30.30. Ribosomal_L2. 1 hit. G3DSA:3.30.70.940. Transcrpt_antiterm_NusG_N. 1 hit.
KO	K02601.
Pfam	PF00467. KOW. 1 hit. PF02357. NusG. 1 hit. [Graphical view]
PRINTS	PR00338. NUSGTNSCPFCT.
SMART	SM00739. KOW. 1 hit. SM00738. NGN. 1 hit. [Graphical view]
SUPFAM	SSF82679. Transcrpt_antiterm_NusG_N. 1 hit. SSF50104. Transl_SH3_like. 1 hit.
TIGRFAMs	TIGR00922. NusG. 1 hit.
PROSITE	PS01014. NUSG. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3AGS8_SYNSC

Accession

Primary (citable) accession number: Q3AGS8

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	December 14, 2011
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)