Q3AGF8 (Q3AGF8_SYNSC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

Syncc9605_2596

Organism

Synechococcus sp. (strain CC9605) [Complete proteome] [HAMAP]

Taxonomic identifier

110662 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	377 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS013325
Molecular function	Sigma factor SAAS SAAS013325 RuleBase RU000715
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3AGF8 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: A6D6085B90DBBEA4	FASTA	377	43,544
	10 20 30 40 50 60 MPSKPRRTGG TRERRSSGTT DLLRLYLQDI GRVDLLTNEE EVTLARLVQR REALLSQQQK 70 80 90 100 110 120 LAESDAAIGE LHRLEELQRR EANQHSHWPT KQEWARAADL PLPELQQRID RGYQAWAEQA 130 140 150 160 170 180 QLEAKDLKLA LRNGRRAKDH MIQANLRLVV AVAKKYQQRG MEILDLVQEG TLGLERAVEK 190 200 210 220 230 240 FDPTRGFRFS TYAYWWIRQG ITRAIATQSR TIRLPVHVTE KLNRIKRVQQ EIASNEGRIA 250 260 270 280 290 300 SIADLARELG ISEDTVRQTL ARVPRSVSLD TRVGREQDTQ LGDLIEDGHA TPEQTLTHDE 310 320 330 340 350 360 LHNDLEHLLD ELTSREAAVL RRRFGLEDDT PQTLAQIGEE LKLSRERVRQ IETRALLKLR 370 QPQRRSKIRD YIQSLDS

References

[1]

"Complete sequence of Synechococcus sp. CC9605." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Schmutz J., Martinez M., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P. Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CC9605.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000110 Genomic DNA. Translation: ABB36324.1.
RefSeq	YP_382879.1. NC_007516.1.
3D structure databases
ProteinModelPortal	Q3AGF8.
SMR	Q3AGF8. Positions 131-208.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3AGF8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3735306.
GenomeReviews	Gene locus Syncc9605_2596 in contig CP000110_GR.
KEGG	syd:Syncc9605_2596.
NMPDR	fig|110662.3.peg.1222.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q3AGF8.
ProtClustDB	CLSK826321.
Enzyme and pathway databases
BioCyc	SSP1131:SYNCC9605_2596-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q3AGF8_SYNSC

Accession

Primary (citable) accession number: Q3AGF8

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	December 14, 2011
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)