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Q3AB72 (Q3AB72_CARHZ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Tyrosine recombinase XerC HAMAP-Rule MF_01808
Gene names
Name:xerC HAMAP-Rule MF_01808
Ordered Locus Names:CHY_1792
OrganismCarboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) [Complete proteome] [HAMAP] EMBL ABB15009.1
Taxonomic identifier246194 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacteraceae › Carboxydothermus ›

Protein attributes

Sequence length297 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids By similarity. HAMAP-Rule MF_01808

Subunit structure

Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD By similarity. HAMAP-Rule MF_01808

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01808 SAAS SAAS011932.

Sequence similarities

Belongs to the 'phage' integrase family. XerC subfamily. HAMAP-Rule MF_01808

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1431 By similarity HAMAP-Rule MF_01808
Active site1671 By similarity HAMAP-Rule MF_01808
Active site2361 By similarity HAMAP-Rule MF_01808
Active site2391 By similarity HAMAP-Rule MF_01808
Active site2621 By similarity HAMAP-Rule MF_01808
Active site2711O-(3'-phospho-DNA)-tyrosine intermediate By similarity HAMAP-Rule MF_01808

Sequences

Sequence LengthMass (Da)Tools
Q3AB72 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: CE718CACD3458A37

FASTA29734,072
        10         20         30         40         50         60 
MAEELKAFLN YLLLERNYSP NTIAAYERDI LDFQEFLQGK SFLSVNEVDL KQFLVDILRK 

        70         80         90        100        110        120 
NRSRRTAARK MVALRSFYRF LKRCGFIKEN PALSLEIPKI PKTLPEVLTV DEVFKVIEGQ 

       130        140        150        160        170        180 
ENSTPTGLRN RALLELFYGA GLRIGEIAGL TLNDLDLTQG YVRVTGKGRR QRIVPLGKYA 

       190        200        210        220        230        240 
LDSLKLYLEA GRPAFKPKSE KLFLNQQGAG LTVRGIRYLI SQIVKKAGLN RKITPHTFRH 

       250        260        270        280        290 
SYATHLLEGG ADIRAVQELL GHKRLSTTEI YTHLSKERLR EVYLRTHPRS REEKNDV

« Hide

References

[1]"Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901."
Wu M., Ren Q., Durkin A.S., Daugherty S.C., Brinkac L.M., Dodson R.J., Madupu R., Sullivan S.A., Kolonay J.F., Nelson W.C., Tallon L.J., Jones K.M., Ulrich L.E., Gonzalez J.M., Zhulin I.B., Robb F.T., Eisen J.A.
PLoS Genet. 1:563-574(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Z-2901 / DSM 6008.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000141 Genomic DNA. Translation: ABB15009.1.
RefSeqYP_360612.1. NC_007503.1.

3D structure databases

ProteinModelPortalQ3AB72.
ModBaseSearch...

Protein-protein interaction databases

STRING246194.CHY_1792.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABB15009; ABB15009; CHY_1792.
GeneID3726230.
KEGGchy:CHY_1792.
PATRIC21276695. VBICarHyd26463_1711.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG4974.
HOGENOMHOG000045294.
KOK03733.
OMANENYRIY.

Enzyme and pathway databases

BioCycCHYD246194:GJCN-1791-MONOMER.

Family and domain databases

Gene3D1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
HAMAPMF_01808. Recomb_XerC.
InterProIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR010998. Integrase_Lambda-type_N.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
IPR011932. Recomb_XerD.
IPR023009. Tyrosine_recombinase_XerC/XerD.
[Graphical view]
PfamPF02899. Phage_integr_N. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMSSF56349. DNA_brk_join_enz. 1 hit.
SSF47823. L_intgrse_like_N. 1 hit.
TIGRFAMsTIGR02225. recomb_XerD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ3AB72_CARHZ
AccessionPrimary (citable) accession number: Q3AB72
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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