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Q3AAG0 (Q3AAG0_CARHZ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000715
Gene names
Name:sigG EMBL ABB14946.1
Ordered Locus Names:CHY_2055
OrganismCarboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) [Complete proteome] [HAMAP] EMBL ABB14946.1
Taxonomic identifier246194 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacteraceae › Carboxydothermus ›

Protein attributes

Sequence length257 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715

Sequence similarities

Belongs to the sigma-70 factor family. RuleBase RU000715

Sequences

Sequence LengthMass (Da)Tools
Q3AAG0 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 11FC247428F6E662

FASTA25729,567
        10         20         30         40         50         60 
MQSNKVEICG VNTSKLPVLT NQEMKKLFLK VKEGDMEARQ KLISGNLRLV LSIIQRFTNR 

        70         80         90        100        110        120 
GEYVDDLFQV GCIGLIKAID NFDLEQNVKF STYAVPMIIG EIRRYLRDNN PIRVSRSLRD 

       130        140        150        160        170        180 
VAYKALQVRD NLVGRFSREP TVSEIAQELK VPQEEVVFAL DAIQDPVSLF EPIYQDGGDP 

       190        200        210        220        230        240 
IFVMDQIKDE KNTDHNWLQG IALKEALERL NERERLILKL RFYEGKTQME VAEEIGISQA 

       250 
QVSRLEKAAL NHLRKFV

« Hide

References

[1]"Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901."
Wu M., Ren Q., Durkin A.S., Daugherty S.C., Brinkac L.M., Dodson R.J., Madupu R., Sullivan S.A., Kolonay J.F., Nelson W.C., Tallon L.J., Jones K.M., Ulrich L.E., Gonzalez J.M., Zhulin I.B., Robb F.T., Eisen J.A.
PLoS Genet. 1:563-574(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Z-2901 / DSM 6008.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000141 Genomic DNA. Translation: ABB14946.1.
RefSeqYP_360874.1. NC_007503.1.

3D structure databases

ProteinModelPortalQ3AAG0.
ModBaseSearch...

Protein-protein interaction databases

STRING246194.CHY_2055.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABB14946; ABB14946; CHY_2055.
GeneID3726360.
KEGGchy:CHY_2055.
PATRIC21277191. VBICarHyd26463_1958.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1191.
HOGENOMHOG000270270.
KOK03091.
OMAQISDERN.
ProtClustDBPRK08215.

Enzyme and pathway databases

BioCycCHYD246194:GJCN-2054-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 2 hits.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR014322. RNA_pol_sigma-B/F/G.
IPR014212. RNA_pol_sigma-G.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88946. Sigma_r2. 1 hit.
SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMsTIGR02980. SigBFG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
TIGR02850. spore_sigG. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ3AAG0_CARHZ
AccessionPrimary (citable) accession number: Q3AAG0
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: May 1, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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