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Q39X46

- Q39X46_GEOMG

UniProt

Q39X46 - Q39X46_GEOMG

Protein
Submitted name:

HNH endonuclease family protein

Gene

Gmet_0936

Organism
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi38 – 381ZincImported
    Metal bindingi41 – 411ZincImported
    Metal bindingi73 – 731ZincImported
    Metal bindingi76 – 761ZincImported

    GO - Molecular functioni

    1. endonuclease activity Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW
    3. nucleic acid binding Source: InterPro

    Keywords - Molecular functioni

    EndonucleaseImported, Hydrolase, Nuclease

    Keywords - Ligandi

    Metal-bindingImported, ZincImported

    Enzyme and pathway databases

    BioCyciGMET269799:GHNY-944-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    HNH endonuclease family proteinImported
    Gene namesi
    Ordered Locus Names:Gmet_0936Imported
    OrganismiGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)Imported
    Taxonomic identifieri269799 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
    ProteomesiUP000007073: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi269799.Gmet_0936.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4H9DX-ray2.60A/B/C1-104[»]
    ProteinModelPortaliQ39X46.
    SMRiQ39X46. Positions 1-98.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ39X46.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG69674.
    HOGENOMiHOG000008808.
    OMAiNVVPACK.
    OrthoDBiEOG676Z8N.

    Family and domain databases

    InterProiIPR002711. HNH.
    IPR003615. HNH_nuc.
    [Graphical view]
    PfamiPF01844. HNH. 1 hit.
    [Graphical view]
    SMARTiSM00507. HNHc. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q39X46-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNYFIVEVSE QEVKREKEKA RELRRSQWWK NRIARGICHY CGEIFPPEEL    50
    TMDHLVPVVR GGKSTRGNVV PACKECNNRK KYLLPVEWEE YLDSLESEPS 100
    DGEG 104
    Length:104
    Mass (Da):12,199
    Last modified:November 22, 2005 - v1
    Checksum:iCF485E6CB6C4F6BA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000148 Genomic DNA. Translation: ABB31178.1.
    RefSeqiYP_006719903.1. NC_007517.1.

    Genome annotation databases

    EnsemblBacteriaiABB31178; ABB31178; Gmet_0936.
    GeneIDi3740092.
    KEGGigme:Gmet_0936.
    PATRICi22001062. VBIGeoMet55070_0972.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000148 Genomic DNA. Translation: ABB31178.1 .
    RefSeqi YP_006719903.1. NC_007517.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4H9D X-ray 2.60 A/B/C 1-104 [» ]
    ProteinModelPortali Q39X46.
    SMRi Q39X46. Positions 1-98.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 269799.Gmet_0936.

    Protocols and materials databases

    DNASUi 3740092.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABB31178 ; ABB31178 ; Gmet_0936 .
    GeneIDi 3740092.
    KEGGi gme:Gmet_0936.
    PATRICi 22001062. VBIGeoMet55070_0972.

    Phylogenomic databases

    eggNOGi NOG69674.
    HOGENOMi HOG000008808.
    OMAi NVVPACK.
    OrthoDBi EOG676Z8N.

    Enzyme and pathway databases

    BioCyci GMET269799:GHNY-944-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q39X46.

    Family and domain databases

    InterProi IPR002711. HNH.
    IPR003615. HNH_nuc.
    [Graphical view ]
    Pfami PF01844. HNH. 1 hit.
    [Graphical view ]
    SMARTi SM00507. HNHc. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Geobacter metallireducens GS-15."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Chain P., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
      Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: GS-15 / ATCC 53774 / DSM 7210Imported.
    2. "Northeast Structural Genomics Consortium Target GmR87."
      Kuzin A., Chen Y., Seetharaman J., Fang F., Xiao R., Cunningham K., Ma L., Owens L., Chen C.X., Everett J.K., Acton T.B., Montelione G.T., Hunt J.F., Tong L.
      Submitted (SEP-2012) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) IN COMPLEX WITH ZINC.

    Entry informationi

    Entry nameiQ39X46_GEOMG
    AccessioniPrimary (citable) accession number: Q39X46
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3