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Protein
Submitted name:

HNH endonuclease family protein

Gene

Gmet_0936

Organism
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi38 – 381ZincCombined sources
Metal bindingi41 – 411ZincCombined sources
Metal bindingi73 – 731ZincCombined sources
Metal bindingi76 – 761ZincCombined sources

GO - Molecular functioni

  1. endonuclease activity Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
  3. nucleic acid binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

EndonucleaseImported, Hydrolase, Nuclease

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciGMET269799:GHNY-944-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
HNH endonuclease family proteinImported
Gene namesi
Ordered Locus Names:Gmet_0936Imported
OrganismiGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)Imported
Taxonomic identifieri269799 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000007073: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi269799.Gmet_0936.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4H9DX-ray2.60A/B/C1-104[»]
ProteinModelPortaliQ39X46.
SMRiQ39X46. Positions 1-98.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ39X46.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG69674.
HOGENOMiHOG000008808.
OMAiNVVPACK.
OrthoDBiEOG676Z8N.

Family and domain databases

InterProiIPR002711. HNH.
IPR003615. HNH_nuc.
[Graphical view]
PfamiPF01844. HNH. 1 hit.
[Graphical view]
SMARTiSM00507. HNHc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39X46-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNYFIVEVSE QEVKREKEKA RELRRSQWWK NRIARGICHY CGEIFPPEEL
60 70 80 90 100
TMDHLVPVVR GGKSTRGNVV PACKECNNRK KYLLPVEWEE YLDSLESEPS

DGEG
Length:104
Mass (Da):12,199
Last modified:November 22, 2005 - v1
Checksum:iCF485E6CB6C4F6BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000148 Genomic DNA. Translation: ABB31178.1.
RefSeqiWP_004514419.1. NC_007517.1.
YP_006719903.1. NC_007517.1.

Genome annotation databases

EnsemblBacteriaiABB31178; ABB31178; Gmet_0936.
GeneIDi3740092.
KEGGigme:Gmet_0936.
PATRICi22001062. VBIGeoMet55070_0972.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000148 Genomic DNA. Translation: ABB31178.1.
RefSeqiWP_004514419.1. NC_007517.1.
YP_006719903.1. NC_007517.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4H9DX-ray2.60A/B/C1-104[»]
ProteinModelPortaliQ39X46.
SMRiQ39X46. Positions 1-98.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269799.Gmet_0936.

Protocols and materials databases

DNASUi3740092.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB31178; ABB31178; Gmet_0936.
GeneIDi3740092.
KEGGigme:Gmet_0936.
PATRICi22001062. VBIGeoMet55070_0972.

Phylogenomic databases

eggNOGiNOG69674.
HOGENOMiHOG000008808.
OMAiNVVPACK.
OrthoDBiEOG676Z8N.

Enzyme and pathway databases

BioCyciGMET269799:GHNY-944-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ39X46.

Family and domain databases

InterProiIPR002711. HNH.
IPR003615. HNH_nuc.
[Graphical view]
PfamiPF01844. HNH. 1 hit.
[Graphical view]
SMARTiSM00507. HNHc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Geobacter metallireducens GS-15."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Chain P., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
    Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GS-15 / ATCC 53774 / DSM 7210Imported.
  2. "Northeast Structural Genomics Consortium Target GmR87."
    Kuzin A., Chen Y., Seetharaman J., Fang F., Xiao R., Cunningham K., Ma L., Owens L., Chen C.X., Everett J.K., Acton T.B., Montelione G.T., Hunt J.F., Tong L.
    Submitted (SEP-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ39X46_GEOMG
AccessioniPrimary (citable) accession number: Q39X46
Entry historyi
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: January 7, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.