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Q39V49 (Q39V49_GEOMG) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Pyridoxal-5'-phosphate-dependent decarboxylase EMBL ABB31875.1
Gene names
Ordered Locus Names:Gmet_1644 EMBL ABB31875.1
OrganismGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [Complete proteome] [HAMAP] EMBL ABB31875.1
Taxonomic identifier269799 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfuromonadales › Geobacteraceae › Geobacter ›

Protein attributes

Sequence length550 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarboxylic acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarboxy-lyase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q39V49 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 3A6F81B10475A03F

FASTA55060,722
        10         20         30         40         50         60 
MPKNRDAARA SLENLYRIFT VPEAPDSTLG AIDQAIAGDV AGFLQTHIVA IERPLEEIEA 

        70         80         90        100        110        120 
DFSSFSIPEE PTYVSEYTEF VKENLVAHSV HTASPAFVGH MTSALPYFML PLARLMTALN 

       130        140        150        160        170        180 
QNVVKVETSK AFTPMERQVL AMLHHLVYGR NDDFYPQWIH NSQHALGAFC SGGTLANVTA 

       190        200        210        220        230        240 
LWVARNRLFA PDGEFRGIAQ EGLARALKHR GADGIAVLVS ERGHYSLGKA ADLLGIGRDD 

       250        260        270        280        290        300 
LIKIKTDANN RIDLKALREE CRRLQDRNTL PLALVGIAGT TETGNVDPLE AMADLAQELG 

       310        320        330        340        350        360 
CHFHVDAAWG GPTLFSDRHR HLLRGIERAD SVTIDGHKQL YVPMGAGMVV FKDPTALSAI 

       370        380        390        400        410        420 
EHHANYILRH GSKDLGSHTL EGSRPGKAML VHAGFSIIGR KGYELLIDMG IERARTFADM 

       430        440        450        460        470        480 
IQRHPDFELI SEPELNILTY RYCPPAIQQA LTDATAQQRA AINGLLDQVC QLLQKYQREA 

       490        500        510        520        530        540 
GKTFVSRTRL HVARHDMELT VLRVVLANPL TTDEILEAVL AEQCEIVRLP EIQALLRQAE 

       550 
ELCPGLAKAV

« Hide

References

[1]"Complete sequence of Geobacter metallireducens GS-15."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Chain P., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GS-15 / ATCC 53774 / DSM 7210.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000148 Genomic DNA. Translation: ABB31875.1.
RefSeqYP_006720611.1. NC_007517.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING269799.Gmet_1644.

Protocols and materials databases

DNASU3740413.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABB31875; ABB31875; Gmet_1644.
GeneID3740413.
KEGGgme:Gmet_1644.
PATRIC22002514. VBIGeoMet55070_1683.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMACHFHVDA.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycGMET269799:GHNY-1667-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ39V49_GEOMG
AccessionPrimary (citable) accession number: Q39V49
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: May 1, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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