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Protein
Submitted name:

Pyridoxal-5'-phosphate-dependent decarboxylase

Gene

Gmet_1644

Organism
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciGMET269799:GHNY-1669-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-5'-phosphate-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Gmet_1644Imported
OrganismiGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)Imported
Taxonomic identifieri269799 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000007073: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi269799.Gmet_1644.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q39V49-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPKNRDAARA SLENLYRIFT VPEAPDSTLG AIDQAIAGDV AGFLQTHIVA
60 70 80 90 100
IERPLEEIEA DFSSFSIPEE PTYVSEYTEF VKENLVAHSV HTASPAFVGH
110 120 130 140 150
MTSALPYFML PLARLMTALN QNVVKVETSK AFTPMERQVL AMLHHLVYGR
160 170 180 190 200
NDDFYPQWIH NSQHALGAFC SGGTLANVTA LWVARNRLFA PDGEFRGIAQ
210 220 230 240 250
EGLARALKHR GADGIAVLVS ERGHYSLGKA ADLLGIGRDD LIKIKTDANN
260 270 280 290 300
RIDLKALREE CRRLQDRNTL PLALVGIAGT TETGNVDPLE AMADLAQELG
310 320 330 340 350
CHFHVDAAWG GPTLFSDRHR HLLRGIERAD SVTIDGHKQL YVPMGAGMVV
360 370 380 390 400
FKDPTALSAI EHHANYILRH GSKDLGSHTL EGSRPGKAML VHAGFSIIGR
410 420 430 440 450
KGYELLIDMG IERARTFADM IQRHPDFELI SEPELNILTY RYCPPAIQQA
460 470 480 490 500
LTDATAQQRA AINGLLDQVC QLLQKYQREA GKTFVSRTRL HVARHDMELT
510 520 530 540 550
VLRVVLANPL TTDEILEAVL AEQCEIVRLP EIQALLRQAE ELCPGLAKAV
Length:550
Mass (Da):60,722
Last modified:November 22, 2005 - v1
Checksum:i3A6F81B10475A03F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000148 Genomic DNA. Translation: ABB31875.1.
RefSeqiYP_006720611.1. NC_007517.1.

Genome annotation databases

EnsemblBacteriaiABB31875; ABB31875; Gmet_1644.
GeneIDi3740413.
KEGGigme:Gmet_1644.
PATRICi22002514. VBIGeoMet55070_1683.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000148 Genomic DNA. Translation: ABB31875.1.
RefSeqiYP_006720611.1. NC_007517.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269799.Gmet_1644.

Protocols and materials databases

DNASUi3740413.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB31875; ABB31875; Gmet_1644.
GeneIDi3740413.
KEGGigme:Gmet_1644.
PATRICi22002514. VBIGeoMet55070_1683.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciGMET269799:GHNY-1669-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Geobacter metallireducens GS-15."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Chain P., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
    Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GS-15 / ATCC 53774 / DSM 7210Imported.

Entry informationi

Entry nameiQ39V49_GEOMG
AccessioniPrimary (citable) accession number: Q39V49
Entry historyi
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: January 7, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.