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Q39RJ9 (SELD_GEOMG) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Selenide, water dikinase
EC=2.7.9.3
Alternative name(s):
Selenium donor protein
Selenophosphate synthase
Gene names
Name:selD
Ordered Locus Names:Gmet_2907
OrganismGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [Complete proteome] [HAMAP]
Taxonomic identifier269799 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfuromonadales › Geobacteraceae › Geobacter

Protein attributes

Sequence length343 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625

Cofactor

Magnesium By similarity. HAMAP MF_00625

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily.

Ontologies

Keywords
   Coding sequence diversitySelenocysteine
   LigandATP-binding
Magnesium
Nucleotide-binding
Selenium
   Molecular functionKinase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

selenide, water dikinase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 343343Selenide, water dikinase HAMAP MF_00625
PRO_0000318648

Regions

Nucleotide binding226 – 2327ATP Potential

Sites

Active site131 Potential
Site161Important for catalytic activity By similarity

Amino acid modifications

Non-standard residue131Selenocysteine Potential

Sequences

Sequence LengthMass (Da)Tools
Q39RJ9 [UniParc].

Last modified February 26, 2008. Version 2.
Checksum: 876B476996BC4BFA

FASTA34334,985
        10         20         30         40         50         60 
MIKLTSLVKA AGUAAKLGPA GLEDALSGIL GKGDDPNLLV GPETADDAGV YRIGEGLALV 

        70         80         90        100        110        120 
DTVDIITPLV DDPFTFGRIA AANALSDVYA MGGRPVTAMN LAFFPACTLP GQILADIMAG 

       130        140        150        160        170        180 
GLDAVREAGA CLVGGHTVED HELKYGLSVT GLISPGRIVR NSTARPGDRL ILTKPLGTGI 

       190        200        210        220        230        240 
VSTAIKADMV APGVVDEAIR WMALLNASAA GLMLECEASA CTDVTGFGLL GHACEMARGA 

       250        260        270        280        290        300 
GVTLEIALDA VPLMGGVEDL VADGLVPAGC YRNRDHYTPL VSVSAGAGGR LIPLFDPQTS 

       310        320        330        340 
GGLLITLSPQ FADSFLSMAR DRGLFAVAVG GVLPPREHAV VIA

« Hide

References

[1]"Complete sequence of Geobacter metallireducens GS-15."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Chain P., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N., Richardson P.
Submitted (OCT-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GS-15 / ATCC 53774 / DSM 7210.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000148 Genomic DNA. Translation: ABB33125.1.
RefSeqYP_385850.1. NC_007517.1.

3D structure databases

ProteinModelPortalQ39RJ9.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ39RJ9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3740857.
GenomeReviewsGene locus Gmet_2907 in contig CP000148_GR.
KEGGgme:Gmet_2907.
PATRIC22005068. VBIGeoMet55070_2941.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0709.
HOGENOMHBG383791.
OMAAGXAAKL.
ProtClustDBCLSK827944.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSELD_GEOMG
AccessionPrimary (citable) accession number: Q39RJ9
Entry history
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: February 26, 2008
Last modified: January 25, 2012
This is version 40 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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