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Protein

Selenide, water dikinase

Gene

selD

Organism
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Synthesizes selenophosphate from selenide and ATP.UniRule annotation

Catalytic activityi

ATP + selenide + H2O = AMP + selenophosphate + phosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei13UniRule annotation1
Sitei16Important for catalytic activityUniRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi226 – 232ATPUniRule annotation7

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionKinase, Transferase
LigandATP-binding, Magnesium, Nucleotide-binding, Selenium

Names & Taxonomyi

Protein namesi
Recommended name:
Selenide, water dikinaseUniRule annotation (EC:2.7.9.3UniRule annotation)
Alternative name(s):
Selenium donor proteinUniRule annotation
Selenophosphate synthaseUniRule annotation
Gene namesi
Name:selDUniRule annotation
Ordered Locus Names:Gmet_2907
OrganismiGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Taxonomic identifieri269799 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
Proteomesi
  • UP000007073 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003186481 – 343Selenide, water dikinaseAdd BLAST343

Interactioni

Protein-protein interaction databases

STRINGi269799.Gmet_2907.

Structurei

3D structure databases

ProteinModelPortaliQ39RJ9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the selenophosphate synthase 1 family. Class I subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219299.
KOiK01008.
OMAiGCIPGGT.
OrthoDBiPOG091H01TK.

Family and domain databases

CDDicd02195. SelD. 1 hit.
Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD. 1 hit.
InterProiView protein in InterPro
IPR010918. PurM-like_C_dom.
IPR036676. PurM-like_C_sf.
IPR016188. PurM-like_N.
IPR036921. PurM-like_N_sf.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
PANTHERiPTHR10256. PTHR10256. 1 hit.
PfamiView protein in Pfam
PF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF55326. SSF55326. 1 hit.
SSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q39RJ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKLTSLVKA AGUAAKLGPA GLEDALSGIL GKGDDPNLLV GPETADDAGV
60 70 80 90 100
YRIGEGLALV DTVDIITPLV DDPFTFGRIA AANALSDVYA MGGRPVTAMN
110 120 130 140 150
LAFFPACTLP GQILADIMAG GLDAVREAGA CLVGGHTVED HELKYGLSVT
160 170 180 190 200
GLISPGRIVR NSTARPGDRL ILTKPLGTGI VSTAIKADMV APGVVDEAIR
210 220 230 240 250
WMALLNASAA GLMLECEASA CTDVTGFGLL GHACEMARGA GVTLEIALDA
260 270 280 290 300
VPLMGGVEDL VADGLVPAGC YRNRDHYTPL VSVSAGAGGR LIPLFDPQTS
310 320 330 340
GGLLITLSPQ FADSFLSMAR DRGLFAVAVG GVLPPREHAV VIA
Length:343
Mass (Da):34,985
Last modified:February 26, 2008 - v2
Checksum:i876B476996BC4BFA
GO

Non-standard residue

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-standard residuei13SelenocysteineSequence analysis1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000148 Genomic DNA. Translation: ABB33125.1.

Genome annotation databases

EnsemblBacteriaiABB33125; ABB33125; Gmet_2907.
KEGGigme:Gmet_2907.

Keywords - Coding sequence diversityi

Selenocysteine

Similar proteinsi

Entry informationi

Entry nameiSELD_GEOMG
AccessioniPrimary (citable) accession number: Q39RJ9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: February 26, 2008
Last modified: October 25, 2017
This is version 72 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families