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Protein

Selenide, water dikinase

Gene

selD

Organism
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Synthesizes selenophosphate from selenide and ATP.UniRule annotation

Catalytic activityi

ATP + selenide + H2O = AMP + selenophosphate + phosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei13 – 131UniRule annotation
Sitei16 – 161Important for catalytic activityUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi226 – 2327ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Ligandi

ATP-binding, Magnesium, Nucleotide-binding, Selenium

Enzyme and pathway databases

BioCyciGMET269799:GHNY-2951-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Selenide, water dikinaseUniRule annotation (EC:2.7.9.3UniRule annotation)
Alternative name(s):
Selenium donor proteinUniRule annotation
Selenophosphate synthaseUniRule annotation
Gene namesi
Name:selDUniRule annotation
Ordered Locus Names:Gmet_2907
OrganismiGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Taxonomic identifieri269799 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
Proteomesi
  • UP000007073 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 343343Selenide, water dikinasePRO_0000318648Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi269799.Gmet_2907.

Structurei

3D structure databases

ProteinModelPortaliQ39RJ9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the selenophosphate synthase 1 family. Class I subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219299.
KOiK01008.
OMAiACIGEVE.
OrthoDBiPOG091H01TK.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD. 1 hit.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q39RJ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKLTSLVKA AGUAAKLGPA GLEDALSGIL GKGDDPNLLV GPETADDAGV
60 70 80 90 100
YRIGEGLALV DTVDIITPLV DDPFTFGRIA AANALSDVYA MGGRPVTAMN
110 120 130 140 150
LAFFPACTLP GQILADIMAG GLDAVREAGA CLVGGHTVED HELKYGLSVT
160 170 180 190 200
GLISPGRIVR NSTARPGDRL ILTKPLGTGI VSTAIKADMV APGVVDEAIR
210 220 230 240 250
WMALLNASAA GLMLECEASA CTDVTGFGLL GHACEMARGA GVTLEIALDA
260 270 280 290 300
VPLMGGVEDL VADGLVPAGC YRNRDHYTPL VSVSAGAGGR LIPLFDPQTS
310 320 330 340
GGLLITLSPQ FADSFLSMAR DRGLFAVAVG GVLPPREHAV VIA
Length:343
Mass (Da):34,985
Last modified:February 26, 2008 - v2
Checksum:i876B476996BC4BFA
GO

Non-standard residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-standard residuei13 – 131SelenocysteineSequence analysis

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000148 Genomic DNA. Translation: ABB33125.1.

Genome annotation databases

EnsemblBacteriaiABB33125; ABB33125; Gmet_2907.
KEGGigme:Gmet_2907.
PATRICi22005068. VBIGeoMet55070_2941.

Keywords - Coding sequence diversityi

Selenocysteine

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000148 Genomic DNA. Translation: ABB33125.1.

3D structure databases

ProteinModelPortaliQ39RJ9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269799.Gmet_2907.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABB33125; ABB33125; Gmet_2907.
KEGGigme:Gmet_2907.
PATRICi22005068. VBIGeoMet55070_2941.

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219299.
KOiK01008.
OMAiACIGEVE.
OrthoDBiPOG091H01TK.

Enzyme and pathway databases

BioCyciGMET269799:GHNY-2951-MONOMER.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD. 1 hit.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSELD_GEOMG
AccessioniPrimary (citable) accession number: Q39RJ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: February 26, 2008
Last modified: September 7, 2016
This is version 65 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.