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Q39832

- Q39832_SOYBN

UniProt

Q39832 - Q39832_SOYBN

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Protein
Ribulose bisphosphate carboxylase small chain
Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.UniRule annotationSAAS annotations

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotationSAAS annotations
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotationSAAS annotations

GO - Molecular functioni

  1. monooxygenase activity Source: UniProtKB-KW
  2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbon fixation Source: UniProtKB-KW
  2. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: EnsemblPlants/Gramene
  3. photorespiration Source: UniProtKB-KW
  4. photosynthesis Source: UniProtKB-KW
  5. response to blue light Source: EnsemblPlants/Gramene
  6. response to far red light Source: EnsemblPlants/Gramene
  7. response to red light Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotations, MonooxygenaseUniRule annotationSAAS annotations, Oxidoreductase

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotations, PhotorespirationUniRule annotationSAAS annotations, PhotosynthesisUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase small chainUniRule annotation (EC:4.1.1.39UniRule annotation)
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
ProteomesiUP000008827: Chromosome 19

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. cell wall Source: EnsemblPlants/Gramene
  3. chloroplast envelope Source: EnsemblPlants/Gramene
  4. chloroplast stroma Source: EnsemblPlants/Gramene
  5. cytosolic ribosome Source: EnsemblPlants/Gramene
  6. membrane Source: EnsemblPlants/Gramene
  7. thylakoid Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

ChloroplastSAAS annotations, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 5555 PredictedImported
Add
BLAST
Chaini56 – 178123 PredictedImported
PRO_5000144784Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriQ39832.

Interactioni

Subunit structurei

8 large chains + 8 small chains By similarity.UniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliQ39832.
SMRiQ39832. Positions 56-178.

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO small chain family.UniRule annotation

Keywords - Domaini

Transit peptideImported

Phylogenomic databases

KOiK01602.
OMAiHAFIRII.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view]
PfamiPF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSiPR00152. RUBISCOSMALL.
SMARTiSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q39832-1 [UniParc]FASTAAdd to Basket

« Hide

MASSMISSPA VTTVNRAGAG MVAPFTGLKS MAGFPTRKTN NDITSIASNG    50
GRVQCMQVWP PVGKKKFETL SYLPDLDDAQ LAKEVEYLLR KGWIPCLEFE 100
LEHGFVYREH NRSPGYYDGR YWTMWKLPMF GCTDASQVLK ELQEAKTAYP 150
NGFIRIIGFD NVRQVQCISF IAYKPPGF 178
Length:178
Mass (Da):20,005
Last modified:November 1, 1996 - v1
Checksum:i566849948665FBD9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF303940 Genomic DNA. No translation available.
AF303941 Genomic DNA. No translation available.
BT089205 Genomic DNA. No translation available.
M16889 Genomic DNA. No translation available.
U39567 mRNA. Translation: AAA81328.1.
AF303939 mRNA. Translation: AAG24882.1.
RefSeqiNP_001241137.1. NM_001254208.1.
UniGeneiGma.64193.

Genome annotation databases

EnsemblPlantsiGLYMA19G06340.1; GLYMA19G06340.1; GLYMA19G06340.
GLYMA19G06370.1; GLYMA19G06370.1; GLYMA19G06370.
GeneIDi100794277.
KEGGigmx:100794277.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF303940 Genomic DNA. No translation available.
AF303941 Genomic DNA. No translation available.
BT089205 Genomic DNA. No translation available.
M16889 Genomic DNA. No translation available.
U39567 mRNA. Translation: AAA81328.1 .
AF303939 mRNA. Translation: AAG24882.1 .
RefSeqi NP_001241137.1. NM_001254208.1.
UniGenei Gma.64193.

3D structure databases

ProteinModelPortali Q39832.
SMRi Q39832. Positions 56-178.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi GLYMA19G06340.1 ; GLYMA19G06340.1 ; GLYMA19G06340 .
GLYMA19G06370.1 ; GLYMA19G06370.1 ; GLYMA19G06370 .
GeneIDi 100794277.
KEGGi gmx:100794277.

Phylogenomic databases

KOi K01602.
OMAi HAFIRII.

Gene expression databases

Genevestigatori Q39832.

Family and domain databases

Gene3Di 3.30.190.10. 1 hit.
InterProi IPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view ]
Pfami PF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view ]
PRINTSi PR00152. RUBISCOSMALL.
SMARTi SM00961. RuBisCO_small. 1 hit.
[Graphical view ]
SUPFAMi SSF55239. SSF55239. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning of a cDNA encoding a ribulose-1,5-bisphosphate carboxylase small subunit in soybean."
    Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
    Hanguk Saenghwahakhoe Chi 25:658-663(1992)
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
    Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Soybean ribulose-1,5-bisphosphate carboxylase small subunit gene."
    He C., Chen S.
    Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Williams 82Imported.
  5. EnsemblPlants
    Submitted (MAY-2013) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Williams 82Imported.

Entry informationi

Entry nameiQ39832_SOYBN
AccessioniPrimary (citable) accession number: Q39832
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 11, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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