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Q39832 (Q39832_SOYBN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Ribulose bisphosphate carboxylase small chain RuleBase RU003627

EC=4.1.1.39 RuleBase RU003627
OrganismGlycine max (Soybean) (Glycine hispida) [Reference proteome]
Taxonomic identifier3847 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja

Protein attributes

Sequence length178 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity. SAAS SAAS024681 RuleBase RU003627

Catalytic activity

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O. SAAS SAAS024681 RuleBase RU003627

3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2. SAAS SAAS024681 RuleBase RU003627

Subunit structure

8 large chains + 8 small chains By similarity. SAAS SAAS024681 RuleBase RU003627

Sequence similarities

Belongs to the RuBisCO small chain family. RuleBase RU003627

Ontologies

Keywords
   Biological processCarbon dioxide fixation SAAS SAAS024681 RuleBase RU003627
Photorespiration SAAS SAAS024681 RuleBase RU003627
Photosynthesis SAAS SAAS024681 RuleBase RU003627
   Cellular componentChloroplast SAAS SAAS024681
Plastid
   DomainTransit peptide EMBL AAA81328.1
   Molecular functionLyase SAAS SAAS024681 RuleBase RU003627
Monooxygenase SAAS SAAS024681 RuleBase RU003627
Oxidoreductase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: UniProtKB-KW

chloroplast ribulose bisphosphate carboxylase complex biogenesis

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

photorespiration

Inferred from electronic annotation. Source: UniProtKB-KW

photosynthesis

Inferred from electronic annotation. Source: UniProtKB-KW

response to blue light

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to far red light

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to red light

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentapoplast

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cell wall

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

chloroplast envelope

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

chloroplast stroma

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cytosolic ribosome

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

membrane

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

thylakoid

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionmonooxygenase activity

Inferred from electronic annotation. Source: UniProtKB-KW

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 5555 Potential EMBL AAA81328.1
Chain56 – 178123 Potential EMBL AAA81328.1
PRO_5000144784

Sequences

Sequence LengthMass (Da)Tools
Q39832 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 566849948665FBD9

FASTA17820,005
        10         20         30         40         50         60 
MASSMISSPA VTTVNRAGAG MVAPFTGLKS MAGFPTRKTN NDITSIASNG GRVQCMQVWP 

        70         80         90        100        110        120 
PVGKKKFETL SYLPDLDDAQ LAKEVEYLLR KGWIPCLEFE LEHGFVYREH NRSPGYYDGR 

       130        140        150        160        170 
YWTMWKLPMF GCTDASQVLK ELQEAKTAYP NGFIRIIGFD NVRQVQCISF IAYKPPGF 

« Hide

References

« Hide 'large scale' references
[1]"Molecular cloning of a cDNA encoding a ribulose-1,5-bisphosphate carboxylase small subunit in soybean."
Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
Hanguk Saenghwahakhoe Chi 25:658-663(1992)
Cited for: NUCLEOTIDE SEQUENCE.
[2]Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Soybean ribulose-1,5-bisphosphate carboxylase small subunit gene."
He C., Chen S.
Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Genome sequence of the palaeopolyploid soybean."
Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D. expand/collapse author list , Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., Jackson S.A.
Nature 463:178-183(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Williams 82 EnsemblPlants GLYMA19G06340.1 EnsemblPlants GLYMA19G06370.1.
[5]EnsemblPlants
Submitted (MAY-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Williams 82 EnsemblPlants GLYMA19G06340.1 EnsemblPlants GLYMA19G06370.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF303940 Genomic DNA. No translation available.
AF303941 Genomic DNA. No translation available.
BT089205 Genomic DNA. No translation available.
M16889 Genomic DNA. No translation available.
U39567 mRNA. Translation: AAA81328.1.
AF303939 mRNA. Translation: AAG24882.1.
RefSeqNP_001241137.1. NM_001254208.1.
UniGeneGma.64193.

3D structure databases

SMRQ39832. Positions 56-178.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsGLYMA19G06340.1; GLYMA19G06340.1; GLYMA19G06340.
GLYMA19G06370.1; GLYMA19G06370.1; GLYMA19G06370.
GeneID100794277.
KEGGgmx:100794277.

Phylogenomic databases

KOK01602.

Gene expression databases

GenevestigatorQ39832.

Family and domain databases

Gene3D3.30.190.10. 1 hit.
InterProIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view]
PfamPF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSPR00152. RUBISCOSMALL.
SMARTSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMSSF55239. SSF55239. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ39832_SOYBN
AccessionPrimary (citable) accession number: Q39832
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: April 16, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)