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Q39832

- Q39832_SOYBN

UniProt

Q39832 - Q39832_SOYBN

Protein

Ribulose bisphosphate carboxylase small chain

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 81 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.UniRule annotationSAAS annotation

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotationSAAS annotation
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. monooxygenase activity Source: UniProtKB-KW
    2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbon fixation Source: UniProtKB-KW
    2. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: EnsemblPlants/Gramene
    3. photorespiration Source: UniProtKB-KW
    4. photosynthesis Source: UniProtKB-KW
    5. response to blue light Source: EnsemblPlants/Gramene
    6. response to far red light Source: EnsemblPlants/Gramene
    7. response to red light Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    LyaseUniRule annotationSAAS annotation, MonooxygenaseUniRule annotationSAAS annotation, Oxidoreductase

    Keywords - Biological processi

    Carbon dioxide fixationUniRule annotationSAAS annotation, PhotorespirationUniRule annotationSAAS annotation, PhotosynthesisUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chainUniRule annotation (EC:4.1.1.39UniRule annotation)
    OrganismiGlycine max (Soybean) (Glycine hispida)
    Taxonomic identifieri3847 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
    ProteomesiUP000008827: Chromosome 19

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. cell wall Source: EnsemblPlants/Gramene
    3. chloroplast envelope Source: EnsemblPlants/Gramene
    4. chloroplast stroma Source: EnsemblPlants/Gramene
    5. cytosolic ribosome Source: EnsemblPlants/Gramene
    6. membrane Source: EnsemblPlants/Gramene
    7. thylakoid Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    ChloroplastSAAS annotation, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 5555 PotentialImportedAdd
    BLAST
    Chaini56 – 178123 PotentialImportedPRO_5000144784Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriQ39832.

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.UniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliQ39832.
    SMRiQ39832. Positions 56-178.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.UniRule annotation

    Keywords - Domaini

    Transit peptideImported

    Phylogenomic databases

    KOiK01602.
    OMAiHAFIRII.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view]
    PfamiPF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    PRINTSiPR00152. RUBISCOSMALL.
    SMARTiSM00961. RuBisCO_small. 1 hit.
    [Graphical view]
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q39832-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASSMISSPA VTTVNRAGAG MVAPFTGLKS MAGFPTRKTN NDITSIASNG    50
    GRVQCMQVWP PVGKKKFETL SYLPDLDDAQ LAKEVEYLLR KGWIPCLEFE 100
    LEHGFVYREH NRSPGYYDGR YWTMWKLPMF GCTDASQVLK ELQEAKTAYP 150
    NGFIRIIGFD NVRQVQCISF IAYKPPGF 178
    Length:178
    Mass (Da):20,005
    Last modified:November 1, 1996 - v1
    Checksum:i566849948665FBD9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF303940 Genomic DNA. No translation available.
    AF303941 Genomic DNA. No translation available.
    BT089205 Genomic DNA. No translation available.
    M16889 Genomic DNA. No translation available.
    U39567 mRNA. Translation: AAA81328.1.
    AF303939 mRNA. Translation: AAG24882.1.
    RefSeqiNP_001241137.1. NM_001254208.1.
    UniGeneiGma.64193.

    Genome annotation databases

    EnsemblPlantsiGLYMA19G06340.1; GLYMA19G06340.1; GLYMA19G06340.
    GLYMA19G06370.1; GLYMA19G06370.1; GLYMA19G06370.
    GeneIDi100794277.
    KEGGigmx:100794277.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF303940 Genomic DNA. No translation available.
    AF303941 Genomic DNA. No translation available.
    BT089205 Genomic DNA. No translation available.
    M16889 Genomic DNA. No translation available.
    U39567 mRNA. Translation: AAA81328.1 .
    AF303939 mRNA. Translation: AAG24882.1 .
    RefSeqi NP_001241137.1. NM_001254208.1.
    UniGenei Gma.64193.

    3D structure databases

    ProteinModelPortali Q39832.
    SMRi Q39832. Positions 56-178.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi GLYMA19G06340.1 ; GLYMA19G06340.1 ; GLYMA19G06340 .
    GLYMA19G06370.1 ; GLYMA19G06370.1 ; GLYMA19G06370 .
    GeneIDi 100794277.
    KEGGi gmx:100794277.

    Phylogenomic databases

    KOi K01602.
    OMAi HAFIRII.

    Gene expression databases

    Genevestigatori Q39832.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view ]
    Pfami PF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    PRINTSi PR00152. RUBISCOSMALL.
    SMARTi SM00961. RuBisCO_small. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Molecular cloning of a cDNA encoding a ribulose-1,5-bisphosphate carboxylase small subunit in soybean."
      Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
      Hanguk Saenghwahakhoe Chi 25:658-663(1992)
      Cited for: NUCLEOTIDE SEQUENCE.
    2. Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
      Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    3. "Soybean ribulose-1,5-bisphosphate carboxylase small subunit gene."
      He C., Chen S.
      Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Williams 82Imported.
    5. EnsemblPlants
      Submitted (MAY-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Williams 82Imported.

    Entry informationi

    Entry nameiQ39832_SOYBN
    AccessioniPrimary (citable) accession number: Q39832
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 1, 1996
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 81 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3