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Q39832 (Q39832_SOYBN) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulose bisphosphate carboxylase small chain RuleBase RU003627
EC=4.1.1.39 RuleBase RU003627
OrganismGlycine max (Soybean) (Glycine hispida) [Reference proteome] EMBL AAA81328.1
Taxonomic identifier3847 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Fabales › Fabaceae › Papilionoideae › Phaseoleae › Glycine

Protein attributes

Sequence length178 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity. SAAS SAAS000894 RuleBase RU003627

Catalytic activity

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O. SAAS SAAS000894 RuleBase RU003627

3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2. SAAS SAAS000894 RuleBase RU003627

Subunit structure

8 large chains + 8 small chains By similarity. SAAS SAAS000894 RuleBase RU003627

Sequence similarities

Belongs to the RuBisCO small chain family. RuleBase RU003627

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 5555 Potential EMBL AAA81328.1
Chain56 – 178123 Potential EMBL AAA81328.1
PRO_5000144784

Sequences

Sequence LengthMass (Da)Tools
Q39832 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 566849948665FBD9

FASTA17820,005
        10         20         30         40         50         60 
MASSMISSPA VTTVNRAGAG MVAPFTGLKS MAGFPTRKTN NDITSIASNG GRVQCMQVWP 

        70         80         90        100        110        120 
PVGKKKFETL SYLPDLDDAQ LAKEVEYLLR KGWIPCLEFE LEHGFVYREH NRSPGYYDGR 

       130        140        150        160        170 
YWTMWKLPMF GCTDASQVLK ELQEAKTAYP NGFIRIIGFD NVRQVQCISF IAYKPPGF

« Hide

References

« Hide 'large scale' references
[1]"Molecular cloning of a cDNA encoding a ribulose-1,5-bisphosphate carboxylase small subunit in soybean."
Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
Hanguk Saenghwahakhoe Chi 25:658-663(1992)
Cited for: NUCLEOTIDE SEQUENCE.
[2]Cho T.-J., Chung K.A., Lee K.J., Chung U.S., Cho N.J., Chae Q.
Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Soybean ribulose-1,5-bisphosphate carboxylase small subunit gene."
He C., Chen S.
Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Genome sequence of the palaeopolyploid soybean."
Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D. expand/collapse author list , Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., Jackson S.A.
Nature 463:178-183(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Williams 82 EnsemblPlants GLYMA19G06340.1 EnsemblPlants GLYMA19G06370.1.
[5]EnsemblPlants
Submitted (NOV-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Williams 82 EnsemblPlants GLYMA19G06340.1 EnsemblPlants GLYMA19G06370.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AF303940 Genomic DNA. No translation available.
AF303941 Genomic DNA. No translation available.
BT089205 Genomic DNA. No translation available.
M16889 Genomic DNA. No translation available.
U39567 mRNA. Translation: AAA81328.1.
AF303939 mRNA. Translation: AAG24882.1.
RefSeqNP_001241137.1. NM_001254208.1.
UniGeneGma.64193.

3D structure databases

SMRQ39832. Positions 56-178.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsGLYMA19G06340.1; GLYMA19G06340.1; GLYMA19G06340.
GLYMA19G06370.1; GLYMA19G06370.1; GLYMA19G06370.
GeneID100794277.
KEGGgmx:100794277.

Phylogenomic databases

KOK01602.

Gene expression databases

GenevestigatorQ39832.

Family and domain databases

Gene3D3.30.190.10. 1 hit.
InterProIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view]
PfamPF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSPR00152. RUBISCOSMALL.
SMARTSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMSSF55239. RuBisCO_small. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ39832_SOYBN
AccessionPrimary (citable) accession number: Q39832
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: April 3, 2013
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info