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Q39827 (SPE1_SOYBN) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine decarboxylase

Short name=ADC
Short name=ARGDC
EC=4.1.1.19
OrganismGlycine max (Soybean) (Glycine hispida) [Reference proteome]
Taxonomic identifier3847 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja

Protein attributes

Sequence length692 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

L-arginine = agmatine + CO2.

Cofactor

Pyridoxal phosphate.

Magnesium.

Pathway

Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1.

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 692692Arginine decarboxylase
PRO_0000149954

Regions

Region337 – 34711Substrate-binding By similarity

Amino acid modifications

Modified residue1531N6-(pyridoxal phosphate)lysine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q39827 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 31BA9C207B5A6EF3

FASTA69274,595
        10         20         30         40         50         60 
MPVLACCVDA AAPPGYAFAG DISFPAPIAF TGVPPATADD TNNSNNHWSP SLSAALYNVD 

        70         80         90        100        110        120 
GWGGPYFAVN TAGNISVRPH GSDTVSHQEI DLLKIVKKAS DPKSLGGLSL QLPLIARFPD 

       130        140        150        160        170        180 
VLKNRLESLQ SAFDYAIQSG GYESHYQGVY PVKCNQDRFV VEDIVKFGSP FRFGLEAGSK 

       190        200        210        220        230        240 
PELLLAMSCL CKGNPDGLLI CNGFKDAEYI SLALVANKLA LNTVIVVEQE EEVDLIVELS 

       250        260        270        280        290        300 
KKLCIKPVIG LRAKLRTKHS GHFGGIFRRR GKFGLTTARV LRVVKNLDLA GMLDCLQLLH 

       310        320        330        340        350        360 
FHIGSQIPST ALLADGVGEA AQIYCELVRL GANMRVIDIG GGLGIDYDGS KSCDSDISVE 

       370        380        390        400        410        420 
YGLEEYAAAV VHAVQCVCDR SVKHPVICSE SGRAIVSHHS VLIFEAVGTS STNGGGAPPA 

       430        440        450        460        470        480 
LSAHYLAEEL SEDYGYLSEL AFRGDYETCL VYTEEMKERC VEQFKQGTVC MEQLAAVEGL 

       490        500        510        520        530        540 
CELVRKAVGA AESVRRYHVN LSIFTSVPDA WGIEQVFPII PIHRLDEKPS VRGILSDLTC 

       550        560        570        580        590        600 
DSDGKIDKFI NGESSLPLHE MEGGRTYYLG MFLGGAYEEA LGGVHNLFGG PSVVRVSQSD 

       610        620        630        640        650        660 
GPHSFAVTRA VPGPSCGDVL RVMQHQPELM FETLKHRAQE YVSHDNAAAL LAAGLARTFD 

       670        680        690 
RMPYLLSLSS FVADDVAAAV PAAQDLGEQW SY 

« Hide

References

[1]"A cDNA encoding an arginine decarboxylase from soybean hypocotyls."
Nam K.H., Lee S.H., Lee J.H.
Plant Gene Register PGR95-142
Cited for: NUCLEOTIDE SEQUENCE [MRNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U35367 mRNA. Translation: AAD09204.1.
PIRT06593.
RefSeqNP_001238359.1. NM_001251430.1.
UniGeneGma.18066.

3D structure databases

ProteinModelPortalQ39827.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID548071.
KEGGgmx:548071.

Enzyme and pathway databases

BRENDA4.1.1.19. 2483.
SABIO-RKQ39827.
UniPathwayUPA00186; UER00284.

Gene expression databases

GenevestigatorQ39827.

Family and domain databases

Gene3D2.40.37.10. 2 hits.
InterProIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
[Graphical view]
PfamPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR01273. speA. 1 hit.
PROSITEPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSPE1_SOYBN
AccessionPrimary (citable) accession number: Q39827
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: November 1, 1996
Last modified: April 16, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways