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Q39827

- SPE1_SOYBN

UniProt

Q39827 - SPE1_SOYBN

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Protein

Arginine decarboxylase

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.

Cofactori

Pyridoxal phosphate.
Magnesium.

Pathwayi

GO - Molecular functioni

  1. arginine decarboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginine catabolic process Source: InterPro
  2. putrescine biosynthetic process Source: UniProtKB-KW
  3. spermidine biosynthetic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Decarboxylase, Lyase

Keywords - Biological processi

Putrescine biosynthesis, Spermidine biosynthesis

Keywords - Ligandi

Magnesium, Pyridoxal phosphate

Enzyme and pathway databases

BRENDAi4.1.1.19. 2483.
SABIO-RKQ39827.
UniPathwayiUPA00186; UER00284.

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine decarboxylase (EC:4.1.1.19)
Short name:
ADC
Short name:
ARGDC
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
ProteomesiUP000008827: Unplaced

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 692692Arginine decarboxylasePRO_0000149954Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei153 – 1531N6-(pyridoxal phosphate)lysineBy similarity

Expressioni

Gene expression databases

GenevestigatoriQ39827.

Structurei

3D structure databases

ProteinModelPortaliQ39827.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni337 – 34711Substrate-bindingBy similarityAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

KOiK01583.

Family and domain databases

Gene3Di2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProiIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFiPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSiPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR01273. speA. 1 hit.
PROSITEiPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39827-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPVLACCVDA AAPPGYAFAG DISFPAPIAF TGVPPATADD TNNSNNHWSP
60 70 80 90 100
SLSAALYNVD GWGGPYFAVN TAGNISVRPH GSDTVSHQEI DLLKIVKKAS
110 120 130 140 150
DPKSLGGLSL QLPLIARFPD VLKNRLESLQ SAFDYAIQSG GYESHYQGVY
160 170 180 190 200
PVKCNQDRFV VEDIVKFGSP FRFGLEAGSK PELLLAMSCL CKGNPDGLLI
210 220 230 240 250
CNGFKDAEYI SLALVANKLA LNTVIVVEQE EEVDLIVELS KKLCIKPVIG
260 270 280 290 300
LRAKLRTKHS GHFGGIFRRR GKFGLTTARV LRVVKNLDLA GMLDCLQLLH
310 320 330 340 350
FHIGSQIPST ALLADGVGEA AQIYCELVRL GANMRVIDIG GGLGIDYDGS
360 370 380 390 400
KSCDSDISVE YGLEEYAAAV VHAVQCVCDR SVKHPVICSE SGRAIVSHHS
410 420 430 440 450
VLIFEAVGTS STNGGGAPPA LSAHYLAEEL SEDYGYLSEL AFRGDYETCL
460 470 480 490 500
VYTEEMKERC VEQFKQGTVC MEQLAAVEGL CELVRKAVGA AESVRRYHVN
510 520 530 540 550
LSIFTSVPDA WGIEQVFPII PIHRLDEKPS VRGILSDLTC DSDGKIDKFI
560 570 580 590 600
NGESSLPLHE MEGGRTYYLG MFLGGAYEEA LGGVHNLFGG PSVVRVSQSD
610 620 630 640 650
GPHSFAVTRA VPGPSCGDVL RVMQHQPELM FETLKHRAQE YVSHDNAAAL
660 670 680 690
LAAGLARTFD RMPYLLSLSS FVADDVAAAV PAAQDLGEQW SY
Length:692
Mass (Da):74,595
Last modified:November 1, 1996 - v1
Checksum:i31BA9C207B5A6EF3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U35367 mRNA. Translation: AAD09204.1.
PIRiT06593.
RefSeqiNP_001238359.1. NM_001251430.1.
UniGeneiGma.18066.

Genome annotation databases

GeneIDi548071.
KEGGigmx:548071.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U35367 mRNA. Translation: AAD09204.1 .
PIRi T06593.
RefSeqi NP_001238359.1. NM_001251430.1.
UniGenei Gma.18066.

3D structure databases

ProteinModelPortali Q39827.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 548071.
KEGGi gmx:548071.

Phylogenomic databases

KOi K01583.

Enzyme and pathway databases

UniPathwayi UPA00186 ; UER00284 .
BRENDAi 4.1.1.19. 2483.
SABIO-RK Q39827.

Gene expression databases

Genevestigatori Q39827.

Family and domain databases

Gene3Di 2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProi IPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view ]
PIRSFi PIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSi PR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR01273. speA. 1 hit.
PROSITEi PS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "A cDNA encoding an arginine decarboxylase from soybean hypocotyls."
    Nam K.H., Lee S.H., Lee J.H.
    Plant Gene Register PGR95-142
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].

Entry informationi

Entry nameiSPE1_SOYBN
AccessioniPrimary (citable) accession number: Q39827
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: November 1, 1996
Last modified: October 1, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3