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Protein
Submitted name:

Chloroplast RNA polymerase sigma subunit

Gene

sigA

Organism
Cyanidium caldarium
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Chloroplast RNA polymerase sigma subunitImported
Gene namesi
Name:sigAImported
OrganismiCyanidium caldariumImported
Taxonomic identifieri2771 [NCBI]
Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeCyanidialesCyanidiaceaeCyanidium

Structurei

3D structure databases

ProteinModelPortaliQ39515.
SMRiQ39515. Positions 349-422, 514-588.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini380 – 39314RNA_pol_sigma70InterPro annotationAdd
BLAST
Domaini549 – 57527RNA_pol_sigma70InterPro annotationAdd
BLAST

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR016262. RNA_pol_sigma_SigB/C/D/F.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000767. RNA_pol_sigma_SigB/C/D. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39515-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDVDYQPRSA YMIAAGSRRT QTHKCGTFEK LQEPGDPDSV LTGIILRSSE
60 70 80 90 100
GAHQERSDAS GLDIIIGTWS PSHRTSALVD PRGLAAYADE LLAAADIDIA
110 120 130 140 150
SLTEEGGLAP QNSANQPSRI SFPGSLGAYV RGLEQQYRSE RMIDRAPSAT
160 170 180 190 200
EIESRKSKKA ALKSQNKMTS SRKETRSSSS QARARQQKGR KSEQAPGVPV
210 220 230 240 250
HMRAGPRTKN TVTVRDPFAD NQSANDGSTV PVEEVYSNSE TEEAESQIES
260 270 280 290 300
DELLDFIVEE VDPADVDLST VEAKDDTIRS YLREIGRYQL LHPGEEIELS
310 320 330 340 350
KQVCILMDLE QFQRSFREEH GKSPTESEWA QGCGYGDDVE KLREHIRDGR
360 370 380 390 400
KAKERMVTAN LRLVVSIAKR YSNRGVALQD LIQEGSIGLI RGVEKFDAER
410 420 430 440 450
GFRFSTYATW WIRQSITRAI SDSSRSIRLP VHVHDTISLI RKQTKALQVE
460 470 480 490 500
LGRPPSEEEI CESVGIDRAK YRLVMECSRN IVSLETPLRS GDDVHFLGES
510 520 530 540 550
LIAPEERAEE NCSRDTLRES IEKVLHCLST REREVIRMRF GLTDGRPRTL
560 570 580 590
EEVGSRFNVT RERIRQIESK ALKKLRTPAE NNFLDEYLGE V
Length:591
Mass (Da):66,381
Last modified:November 1, 1996 - v1
Checksum:iE464D21D5E2C8B2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83179 Genomic DNA. Translation: BAA11832.1.
PIRiT14364.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83179 Genomic DNA. Translation: BAA11832.1.
PIRiT14364.

3D structure databases

ProteinModelPortaliQ39515.
SMRiQ39515. Positions 349-422, 514-588.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR016262. RNA_pol_sigma_SigB/C/D/F.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000767. RNA_pol_sigma_SigB/C/D. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Nuclear encoding of a chloroplast RNA polymerase sigma subunit in a red alga."
    Tanaka K., Oikawa K., Ohta N., Kuroiwa H., Kuroiwa T., Takahashi H.
    Science 272:1932-1935(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RK-1Imported.

Entry informationi

Entry nameiQ39515_CYACA
AccessioniPrimary (citable) accession number: Q39515
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 16, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.