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Protein
Submitted name:

1 Sc-3 protein

Gene

1 Sc-3

Organism
Betula pendula (European white birch) (Betula verrucosa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Pathogenesis-related proteinUniRule annotation

Keywords - Biological processi

Plant defense

Names & Taxonomyi

Protein namesi
Submitted name:
1 Sc-3 proteinImported
Submitted name:
Ypr10b proteinImported
Gene namesi
Name:1 Sc-3Imported
Synonyms:ypr10bImported
OrganismiBetula pendula (European white birch) (Betula verrucosa)Imported
Taxonomic identifieri3505 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFagalesBetulaceaeBetula

Pathology & Biotechi

Protein family/group databases

Allergomei106. Bet v 1.0301.
89. Bet v 1.

Structurei

3D structure databases

SMRiQ39415. Positions 2-160.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 154154Bet_v_1InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the BetVI family.UniRule annotation

Family and domain databases

Gene3Di3.30.530.20. 1 hit.
InterProiIPR000916. Bet_v_I/MLP.
IPR024949. Bet_v_I_allergen.
IPR023393. START-like_dom.
[Graphical view]
PfamiPF00407. Bet_v_1. 1 hit.
[Graphical view]
PRINTSiPR00634. BETALLERGEN.
PROSITEiPS00451. PATHOGENESIS_BETVI. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39415-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGVFNYEDEA TSVIAPARLF KSFVLDADNL IPKVAPENVS SAENIEGNGG
60 70 80 90 100
PGTIKKITFP EGSHFKYMKH RVDEIDHANF KYCYSIIEGG PLGDTLEKIS
110 120 130 140 150
YEIKIVAAPG GGSILKITSK YHTKGDISLN EEEIKAGKEK GAGLFKAVEN
160
YLVAHPNAYN
Length:160
Mass (Da):17,422
Last modified:November 1, 1996 - v1
Checksum:iABD4E9ADC2931558
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X77601 mRNA. Translation: CAA54696.1.
AJ289770 Genomic DNA. Translation: CAB94732.1.
PIRiS47249.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X77601 mRNA. Translation: CAA54696.1.
AJ289770 Genomic DNA. Translation: CAB94732.1.
PIRiS47249.

3D structure databases

SMRiQ39415. Positions 2-160.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

Allergomei106. Bet v 1.0301.
89. Bet v 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.30.530.20. 1 hit.
InterProiIPR000916. Bet_v_I/MLP.
IPR024949. Bet_v_I_allergen.
IPR023393. START-like_dom.
[Graphical view]
PfamiPF00407. Bet_v_1. 1 hit.
[Graphical view]
PRINTSiPR00634. BETALLERGEN.
PROSITEiPS00451. PATHOGENESIS_BETVI. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "cDNA cloning and characterization of three genes in the Bet v 1 gene family that encode pathogenesis-related proteins."
    Swoboda I., Scheiner O., Heberle-Bors E., Vicente O.
    Plant Cell Environ. 18:865-874(1995)
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Stress-induced expression of two defense-related genes, Pal and YPR10, in birch (Betula pendula Roth)."
    Pellinen R., Korhonen M., Utriainen M., Overmyer K., Kiiskinen M., Lapinjoki S., Palva T., Kangasjarvi J.
    Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: LeafImported.

Entry informationi

Entry nameiQ39415_BETPN
AccessioniPrimary (citable) accession number: Q39415
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 17, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.