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Protein

Zinc finger protein 4

Gene

ZFP4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri85 – 107C2H2-typePROSITE-ProRule annotationAdd BLAST23

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • sequence-specific DNA binding Source: TAIR
  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • transcription regulatory region DNA binding Source: TAIR

GO - Biological processi

  • glucosinolate metabolic process Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 4
Gene namesi
Name:ZFP4
Ordered Locus Names:At1g66140
ORF Names:F15E12.19
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G66140.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000478451 – 260Zinc finger protein 4Add BLAST260

Proteomic databases

PaxDbiQ39263.

PTM databases

iPTMnetiQ39263.

Expressioni

Gene expression databases

ExpressionAtlasiQ39263. baseline and differential.
GenevisibleiQ39263. AT.

Interactioni

Protein-protein interaction databases

BioGridi28149. 2 interactors.
STRINGi3702.AT1G66140.1.

Structurei

3D structure databases

ProteinModelPortaliQ39263.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi12 – 18Poly-Ser7
Compositional biasi43 – 49Poly-Asn7
Compositional biasi72 – 77Poly-Gln6

Sequence similaritiesi

Contains 1 C2H2-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri85 – 107C2H2-typePROSITE-ProRule annotationAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IZXQ. Eukaryota.
ENOG410ZCT7. LUCA.
HOGENOMiHOG000239894.
InParanoidiQ39263.
OMAiEMKSSAR.
OrthoDBiEOG09360UI9.
PhylomeDBiQ39263.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 1 hit.
PS50157. ZINC_FINGER_C2H2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39263-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL
60 70 80 90 100
DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
110 120 130 140 150
GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH
160 170 180 190 200
GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
210 220 230 240 250
PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME
260
SSLPDLTLKL
Length:260
Mass (Da):28,309
Last modified:January 27, 2003 - v2
Checksum:i48484EC120250F09
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti119 – 143RMGLA…ATAAA → LWVLLGSSPVEDQVAIMRLL PQQP in AAA87300 (PubMed:7599312).CuratedAdd BLAST25

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L39647 mRNA. Translation: AAA87300.1.
AC026480 Genomic DNA. Translation: AAG51296.1.
CP002684 Genomic DNA. Translation: AEE34466.1.
AF361630 mRNA. Translation: AAK32798.1.
AY058087 mRNA. Translation: AAL24195.1.
AY056067 mRNA. Translation: AAL06967.1.
PIRiB96686.
S55884.
RefSeqiNP_176788.1. NM_105285.3.
UniGeneiAt.25527.

Genome annotation databases

EnsemblPlantsiAT1G66140.1; AT1G66140.1; AT1G66140.
GeneIDi842928.
GrameneiAT1G66140.1; AT1G66140.1; AT1G66140.
KEGGiath:AT1G66140.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L39647 mRNA. Translation: AAA87300.1.
AC026480 Genomic DNA. Translation: AAG51296.1.
CP002684 Genomic DNA. Translation: AEE34466.1.
AF361630 mRNA. Translation: AAK32798.1.
AY058087 mRNA. Translation: AAL24195.1.
AY056067 mRNA. Translation: AAL06967.1.
PIRiB96686.
S55884.
RefSeqiNP_176788.1. NM_105285.3.
UniGeneiAt.25527.

3D structure databases

ProteinModelPortaliQ39263.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi28149. 2 interactors.
STRINGi3702.AT1G66140.1.

PTM databases

iPTMnetiQ39263.

Proteomic databases

PaxDbiQ39263.

Protocols and materials databases

DNASUi842928.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G66140.1; AT1G66140.1; AT1G66140.
GeneIDi842928.
GrameneiAT1G66140.1; AT1G66140.1; AT1G66140.
KEGGiath:AT1G66140.

Organism-specific databases

TAIRiAT1G66140.

Phylogenomic databases

eggNOGiENOG410IZXQ. Eukaryota.
ENOG410ZCT7. LUCA.
HOGENOMiHOG000239894.
InParanoidiQ39263.
OMAiEMKSSAR.
OrthoDBiEOG09360UI9.
PhylomeDBiQ39263.

Miscellaneous databases

PROiQ39263.

Gene expression databases

ExpressionAtlasiQ39263. baseline and differential.
GenevisibleiQ39263. AT.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 1 hit.
PS50157. ZINC_FINGER_C2H2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiZFP4_ARATH
AccessioniPrimary (citable) accession number: Q39263
Secondary accession number(s): Q9C8D2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 27, 2003
Last sequence update: January 27, 2003
Last modified: November 30, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.