Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q39224

- SRG1_ARATH

UniProt

Q39224 - SRG1_ARATH

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Protein SRG1

Gene

SRG1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi233 – 2331IronPROSITE-ProRule annotation
Metal bindingi235 – 2351IronPROSITE-ProRule annotation
Metal bindingi290 – 2901IronPROSITE-ProRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor Source: TAIR
  3. oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Source: InterPro

GO - Biological processi

  1. organ senescence Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Iron, Metal-binding

Enzyme and pathway databases

BioCyciARA:AT1G17020-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein SRG1
Short name:
AtSRG1
Alternative name(s):
Protein SENESCENCE-RELATED GENE 1
Gene namesi
Name:SRG1
Ordered Locus Names:At1g17020
ORF Names:F20D23.28, F6I1.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G17020.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 358358Protein SRG1PRO_0000358940Add
BLAST

Proteomic databases

PaxDbiQ39224.
PRIDEiQ39224.

Expressioni

Tissue specificityi

Low expression in roots and leaves.1 Publication

Developmental stagei

Highly induced during normal senescence.1 Publication

Inductioni

By virus infection.1 Publication

Gene expression databases

GenevestigatoriQ39224.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G17020.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ39224.
SMRiQ39224. Positions 19-338.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini209 – 309101Fe2OG dioxygenasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 Fe2OG dioxygenase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG3491.
HOGENOMiHOG000276735.
InParanoidiQ39224.
OMAiYKEVGPA.
PhylomeDBiQ39224.

Family and domain databases

Gene3Di2.60.120.330. 1 hit.
InterProiIPR026992. DIOX_N.
IPR027443. IPNS-like.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
[Graphical view]
PfamiPF03171. 2OG-FeII_Oxy. 1 hit.
PF14226. DIOX_N. 1 hit.
[Graphical view]
PROSITEiPS51471. FE2OG_OXY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39224-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEAKGAAQWS SILVPSVQEM VKEKTITTVP PRYVRSDQDK TEVDDDFDVK
60 70 80 90 100
IEIPIIDMKR LCSSTTMDSE VEKLDFACKE WGFFQLVNHG IDSSFLDKVK
110 120 130 140 150
SEIQDFFNLP MEEKKKFWQR PDEIEGFGQA FVVSEDQKLD WADLFFHTVQ
160 170 180 190 200
PVELRKPHLF PKLPLPFRDT LEMYSSEVQS VAKILIAKMA RALEIKPEEL
210 220 230 240 250
EKLFDDVDSV QSMRMNYYPP CPQPDQVIGL TPHSDSVGLT VLMQVNDVEG
260 270 280 290 300
LQIKKDGKWV PVKPLPNAFI VNIGDVLEII TNGTYRSIEH RGVVNSEKER
310 320 330 340 350
LSIATFHNVG MYKEVGPAKS LVERQKVARF KRLTMKEYND GLFSRTLDGK

AYLDALRI
Length:358
Mass (Da):41,039
Last modified:November 1, 1996 - v1
Checksum:iDFEEF51DE9FB69E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79052 mRNA. Translation: CAA55654.1.
AC007651 Genomic DNA. Translation: AAD50032.1.
CP002684 Genomic DNA. Translation: AEE29531.1.
AY048302 mRNA. Translation: AAK82564.1.
AY139794 mRNA. Translation: AAM98100.1.
PIRiS44261.
RefSeqiNP_173145.1. NM_101562.3.
UniGeneiAt.21208.

Genome annotation databases

EnsemblPlantsiAT1G17020.1; AT1G17020.1; AT1G17020.
GeneIDi838272.
KEGGiath:AT1G17020.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79052 mRNA. Translation: CAA55654.1 .
AC007651 Genomic DNA. Translation: AAD50032.1 .
CP002684 Genomic DNA. Translation: AEE29531.1 .
AY048302 mRNA. Translation: AAK82564.1 .
AY139794 mRNA. Translation: AAM98100.1 .
PIRi S44261.
RefSeqi NP_173145.1. NM_101562.3.
UniGenei At.21208.

3D structure databases

ProteinModelPortali Q39224.
SMRi Q39224. Positions 19-338.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT1G17020.1-P.

Proteomic databases

PaxDbi Q39224.
PRIDEi Q39224.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT1G17020.1 ; AT1G17020.1 ; AT1G17020 .
GeneIDi 838272.
KEGGi ath:AT1G17020.

Organism-specific databases

TAIRi AT1G17020.

Phylogenomic databases

eggNOGi COG3491.
HOGENOMi HOG000276735.
InParanoidi Q39224.
OMAi YKEVGPA.
PhylomeDBi Q39224.

Enzyme and pathway databases

BioCyci ARA:AT1G17020-MONOMER.

Gene expression databases

Genevestigatori Q39224.

Family and domain databases

Gene3Di 2.60.120.330. 1 hit.
InterProi IPR026992. DIOX_N.
IPR027443. IPNS-like.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
[Graphical view ]
Pfami PF03171. 2OG-FeII_Oxy. 1 hit.
PF14226. DIOX_N. 1 hit.
[Graphical view ]
PROSITEi PS51471. FE2OG_OXY. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of proliferation-induced genes in Arabidopsis thaliana. Characterization of a new member of the highly evolutionarily conserved histone H2A.F/Z variant subfamily."
    Callard D., Mazzolini L.
    Plant Physiol. 115:1385-1395(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
    Strain: cv. C24.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants."
    Whitham S.A., Quan S., Chang H.S., Cooper B., Estes B., Zhu T., Wang X., Hou Y.M.
    Plant J. 33:271-283(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION BY VIRUS INFECTION.

Entry informationi

Entry nameiSRG1_ARATH
AccessioniPrimary (citable) accession number: Q39224
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: November 1, 1996
Last modified: October 1, 2014
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Miscellaneous

Unlike the homologous protein NCS1 of Coptis japonica, SRG1 has no norcoclaurine synthase activity.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3