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Q39224

- SRG1_ARATH

UniProt

Q39224 - SRG1_ARATH

Protein

Protein SRG1

Gene

SRG1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 90 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi233 – 2331IronPROSITE-ProRule annotation
    Metal bindingi235 – 2351IronPROSITE-ProRule annotation
    Metal bindingi290 – 2901IronPROSITE-ProRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor Source: TAIR
    3. oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Source: InterPro

    GO - Biological processi

    1. organ senescence Source: TAIR

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Ligandi

    Iron, Metal-binding

    Enzyme and pathway databases

    BioCyciARA:AT1G17020-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein SRG1
    Short name:
    AtSRG1
    Alternative name(s):
    Protein SENESCENCE-RELATED GENE 1
    Gene namesi
    Name:SRG1
    Ordered Locus Names:At1g17020
    ORF Names:F20D23.28, F6I1.30
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 1

    Organism-specific databases

    TAIRiAT1G17020.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 358358Protein SRG1PRO_0000358940Add
    BLAST

    Proteomic databases

    PaxDbiQ39224.
    PRIDEiQ39224.

    Expressioni

    Tissue specificityi

    Low expression in roots and leaves.1 Publication

    Developmental stagei

    Highly induced during normal senescence.1 Publication

    Inductioni

    By virus infection.1 Publication

    Gene expression databases

    GenevestigatoriQ39224.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT1G17020.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ39224.
    SMRiQ39224. Positions 19-338.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini209 – 309101Fe2OG dioxygenasePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 Fe2OG dioxygenase domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG3491.
    HOGENOMiHOG000276735.
    InParanoidiQ39224.
    OMAiYKEVGPA.
    PhylomeDBiQ39224.

    Family and domain databases

    Gene3Di2.60.120.330. 1 hit.
    InterProiIPR026992. DIOX_N.
    IPR027443. IPNS-like.
    IPR005123. Oxoglu/Fe-dep_dioxygenase.
    [Graphical view]
    PfamiPF03171. 2OG-FeII_Oxy. 1 hit.
    PF14226. DIOX_N. 1 hit.
    [Graphical view]
    PROSITEiPS51471. FE2OG_OXY. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q39224-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEAKGAAQWS SILVPSVQEM VKEKTITTVP PRYVRSDQDK TEVDDDFDVK    50
    IEIPIIDMKR LCSSTTMDSE VEKLDFACKE WGFFQLVNHG IDSSFLDKVK 100
    SEIQDFFNLP MEEKKKFWQR PDEIEGFGQA FVVSEDQKLD WADLFFHTVQ 150
    PVELRKPHLF PKLPLPFRDT LEMYSSEVQS VAKILIAKMA RALEIKPEEL 200
    EKLFDDVDSV QSMRMNYYPP CPQPDQVIGL TPHSDSVGLT VLMQVNDVEG 250
    LQIKKDGKWV PVKPLPNAFI VNIGDVLEII TNGTYRSIEH RGVVNSEKER 300
    LSIATFHNVG MYKEVGPAKS LVERQKVARF KRLTMKEYND GLFSRTLDGK 350
    AYLDALRI 358
    Length:358
    Mass (Da):41,039
    Last modified:November 1, 1996 - v1
    Checksum:iDFEEF51DE9FB69E1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X79052 mRNA. Translation: CAA55654.1.
    AC007651 Genomic DNA. Translation: AAD50032.1.
    CP002684 Genomic DNA. Translation: AEE29531.1.
    AY048302 mRNA. Translation: AAK82564.1.
    AY139794 mRNA. Translation: AAM98100.1.
    PIRiS44261.
    RefSeqiNP_173145.1. NM_101562.3.
    UniGeneiAt.21208.

    Genome annotation databases

    EnsemblPlantsiAT1G17020.1; AT1G17020.1; AT1G17020.
    GeneIDi838272.
    KEGGiath:AT1G17020.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X79052 mRNA. Translation: CAA55654.1 .
    AC007651 Genomic DNA. Translation: AAD50032.1 .
    CP002684 Genomic DNA. Translation: AEE29531.1 .
    AY048302 mRNA. Translation: AAK82564.1 .
    AY139794 mRNA. Translation: AAM98100.1 .
    PIRi S44261.
    RefSeqi NP_173145.1. NM_101562.3.
    UniGenei At.21208.

    3D structure databases

    ProteinModelPortali Q39224.
    SMRi Q39224. Positions 19-338.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT1G17020.1-P.

    Proteomic databases

    PaxDbi Q39224.
    PRIDEi Q39224.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT1G17020.1 ; AT1G17020.1 ; AT1G17020 .
    GeneIDi 838272.
    KEGGi ath:AT1G17020.

    Organism-specific databases

    TAIRi AT1G17020.

    Phylogenomic databases

    eggNOGi COG3491.
    HOGENOMi HOG000276735.
    InParanoidi Q39224.
    OMAi YKEVGPA.
    PhylomeDBi Q39224.

    Enzyme and pathway databases

    BioCyci ARA:AT1G17020-MONOMER.

    Gene expression databases

    Genevestigatori Q39224.

    Family and domain databases

    Gene3Di 2.60.120.330. 1 hit.
    InterProi IPR026992. DIOX_N.
    IPR027443. IPNS-like.
    IPR005123. Oxoglu/Fe-dep_dioxygenase.
    [Graphical view ]
    Pfami PF03171. 2OG-FeII_Oxy. 1 hit.
    PF14226. DIOX_N. 1 hit.
    [Graphical view ]
    PROSITEi PS51471. FE2OG_OXY. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Identification of proliferation-induced genes in Arabidopsis thaliana. Characterization of a new member of the highly evolutionarily conserved histone H2A.F/Z variant subfamily."
      Callard D., Mazzolini L.
      Plant Physiol. 115:1385-1395(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
      Strain: cv. C24.
    2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
      Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
      , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
      Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants."
      Whitham S.A., Quan S., Chang H.S., Cooper B., Estes B., Zhu T., Wang X., Hou Y.M.
      Plant J. 33:271-283(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: INDUCTION BY VIRUS INFECTION.

    Entry informationi

    Entry nameiSRG1_ARATH
    AccessioniPrimary (citable) accession number: Q39224
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 20, 2009
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 90 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Unlike the homologous protein NCS1 of Coptis japonica, SRG1 has no norcoclaurine synthase activity.

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3