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Q39224 (SRG1_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 89. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein SRG1

Short name=AtSRG1
Alternative name(s):
Protein SENESCENCE-RELATED GENE 1
Gene names
Name:SRG1
Ordered Locus Names:At1g17020
ORF Names:F20D23.28, F6I1.30
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length358 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Tissue specificity

Low expression in roots and leaves. Ref.1

Developmental stage

Highly induced during normal senescence. Ref.1

Induction

By virus infection. Ref.5

Miscellaneous

Unlike the homologous protein NCS1 of Coptis japonica, SRG1 has no norcoclaurine synthase activity.

Sequence similarities

Belongs to the iron/ascorbate-dependent oxidoreductase family.

Contains 1 Fe2OG dioxygenase domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 358358Protein SRG1
PRO_0000358940

Regions

Domain209 – 309101Fe2OG dioxygenase

Sites

Metal binding2331Iron By similarity
Metal binding2351Iron By similarity
Metal binding2901Iron By similarity

Sequences

Sequence LengthMass (Da)Tools
Q39224 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: DFEEF51DE9FB69E1

FASTA35841,039
        10         20         30         40         50         60 
MEAKGAAQWS SILVPSVQEM VKEKTITTVP PRYVRSDQDK TEVDDDFDVK IEIPIIDMKR 

        70         80         90        100        110        120 
LCSSTTMDSE VEKLDFACKE WGFFQLVNHG IDSSFLDKVK SEIQDFFNLP MEEKKKFWQR 

       130        140        150        160        170        180 
PDEIEGFGQA FVVSEDQKLD WADLFFHTVQ PVELRKPHLF PKLPLPFRDT LEMYSSEVQS 

       190        200        210        220        230        240 
VAKILIAKMA RALEIKPEEL EKLFDDVDSV QSMRMNYYPP CPQPDQVIGL TPHSDSVGLT 

       250        260        270        280        290        300 
VLMQVNDVEG LQIKKDGKWV PVKPLPNAFI VNIGDVLEII TNGTYRSIEH RGVVNSEKER 

       310        320        330        340        350 
LSIATFHNVG MYKEVGPAKS LVERQKVARF KRLTMKEYND GLFSRTLDGK AYLDALRI 

« Hide

References

« Hide 'large scale' references
[1]"Identification of proliferation-induced genes in Arabidopsis thaliana. Characterization of a new member of the highly evolutionarily conserved histone H2A.F/Z variant subfamily."
Callard D., Mazzolini L.
Plant Physiol. 115:1385-1395(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
Strain: cv. C24.
[2]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[5]"Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants."
Whitham S.A., Quan S., Chang H.S., Cooper B., Estes B., Zhu T., Wang X., Hou Y.M.
Plant J. 33:271-283(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: INDUCTION BY VIRUS INFECTION.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X79052 mRNA. Translation: CAA55654.1.
AC007651 Genomic DNA. Translation: AAD50032.1.
CP002684 Genomic DNA. Translation: AEE29531.1.
AY048302 mRNA. Translation: AAK82564.1.
AY139794 mRNA. Translation: AAM98100.1.
PIRS44261.
RefSeqNP_173145.1. NM_101562.3.
UniGeneAt.21208.

3D structure databases

ProteinModelPortalQ39224.
SMRQ39224. Positions 19-338.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3702.AT1G17020.1-P.

Proteomic databases

PaxDbQ39224.
PRIDEQ39224.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G17020.1; AT1G17020.1; AT1G17020.
GeneID838272.
KEGGath:AT1G17020.

Organism-specific databases

TAIRAT1G17020.

Phylogenomic databases

eggNOGCOG3491.
HOGENOMHOG000276735.
InParanoidQ39224.
OMAYKEVGPA.
PhylomeDBQ39224.

Enzyme and pathway databases

BioCycARA:AT1G17020-MONOMER.

Gene expression databases

GenevestigatorQ39224.

Family and domain databases

Gene3D2.60.120.330. 1 hit.
InterProIPR026992. DIOX_N.
IPR027443. IPNS-like.
IPR005123. Oxoglu/Fe-dep_dioxygenase.
[Graphical view]
PfamPF03171. 2OG-FeII_Oxy. 1 hit.
PF14226. DIOX_N. 1 hit.
[Graphical view]
PROSITEPS51471. FE2OG_OXY. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSRG1_ARATH
AccessionPrimary (citable) accession number: Q39224
Entry history
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: November 1, 1996
Last modified: May 14, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names