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Protein

Protein SRG1

Gene

SRG1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Miscellaneous

Unlike the homologous protein NCS1 of Coptis japonica, SRG1 has no norcoclaurine synthase activity.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi233IronPROSITE-ProRule annotation1
Metal bindingi235IronPROSITE-ProRule annotation1
Metal bindingi290IronPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

  • leaf senescence Source: TAIR

Keywordsi

Molecular functionOxidoreductase
LigandIron, Metal-binding

Enzyme and pathway databases

BioCyciARA:AT1G17020-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein SRG1
Short name:
AtSRG1
Alternative name(s):
Protein SENESCENCE-RELATED GENE 1
Gene namesi
Name:SRG1
Ordered Locus Names:At1g17020
ORF Names:F20D23.28, F6I1.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G17020
TAIRilocus:2020407 AT1G17020

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003589401 – 358Protein SRG1Add BLAST358

Proteomic databases

PaxDbiQ39224

Expressioni

Tissue specificityi

Low expression in roots and leaves.1 Publication

Developmental stagei

Highly induced during normal senescence.1 Publication

Inductioni

By virus infection.1 Publication

Gene expression databases

ExpressionAtlasiQ39224 baseline and differential
GenevisibleiQ39224 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G17020.1

Structurei

3D structure databases

ProteinModelPortaliQ39224
SMRiQ39224
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini209 – 309Fe2OG dioxygenasePROSITE-ProRule annotationAdd BLAST101

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0143 Eukaryota
COG3491 LUCA
HOGENOMiHOG000276735
InParanoidiQ39224
OMAiKMEETEM
OrthoDBiEOG09360JMM
PhylomeDBiQ39224

Family and domain databases

Gene3Di2.60.120.330, 1 hit
InterProiView protein in InterPro
IPR026992 DIOX_N
IPR027443 IPNS-like
IPR005123 Oxoglu/Fe-dep_dioxygenase
PfamiView protein in Pfam
PF03171 2OG-FeII_Oxy, 1 hit
PF14226 DIOX_N, 1 hit
PROSITEiView protein in PROSITE
PS51471 FE2OG_OXY, 1 hit

Sequencei

Sequence statusi: Complete.

Q39224-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAKGAAQWS SILVPSVQEM VKEKTITTVP PRYVRSDQDK TEVDDDFDVK
60 70 80 90 100
IEIPIIDMKR LCSSTTMDSE VEKLDFACKE WGFFQLVNHG IDSSFLDKVK
110 120 130 140 150
SEIQDFFNLP MEEKKKFWQR PDEIEGFGQA FVVSEDQKLD WADLFFHTVQ
160 170 180 190 200
PVELRKPHLF PKLPLPFRDT LEMYSSEVQS VAKILIAKMA RALEIKPEEL
210 220 230 240 250
EKLFDDVDSV QSMRMNYYPP CPQPDQVIGL TPHSDSVGLT VLMQVNDVEG
260 270 280 290 300
LQIKKDGKWV PVKPLPNAFI VNIGDVLEII TNGTYRSIEH RGVVNSEKER
310 320 330 340 350
LSIATFHNVG MYKEVGPAKS LVERQKVARF KRLTMKEYND GLFSRTLDGK

AYLDALRI
Length:358
Mass (Da):41,039
Last modified:November 1, 1996 - v1
Checksum:iDFEEF51DE9FB69E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79052 mRNA Translation: CAA55654.1
AC007651 Genomic DNA Translation: AAD50032.1
CP002684 Genomic DNA Translation: AEE29531.1
AY048302 mRNA Translation: AAK82564.1
AY139794 mRNA Translation: AAM98100.1
PIRiS44261
RefSeqiNP_173145.1, NM_101562.4
UniGeneiAt.21208

Genome annotation databases

EnsemblPlantsiAT1G17020.1; AT1G17020.1; AT1G17020
GeneIDi838272
GrameneiAT1G17020.1; AT1G17020.1; AT1G17020
KEGGiath:AT1G17020

Similar proteinsi

Entry informationi

Entry nameiSRG1_ARATH
AccessioniPrimary (citable) accession number: Q39224
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: November 1, 1996
Last modified: April 25, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health