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Protein
Submitted name:

At2g34420/T31E10.24

Gene

Lhb1B2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Photosynthesis

Keywords - Ligandi

ChlorophyllSAAS annotation, Chromophore, MagnesiumSAAS annotation, Metal-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
At2g34420/T31E10.24Imported
Submitted name:
Photosystem II light harvesting complex protein B1B2Imported
Submitted name:
Photosystem II type I chlorophyll a /b binding proteinImported
Submitted name:
Photosystem II type I chlorophyll a b binding proteinImported
Submitted name:
Photosystem II type I chlorophyll a/b binding proteinImported
Submitted name:
Putative photosystem II type I chlorophyll a/b binding proteinImported
Gene namesi
Name:Lhb1B2Imported
Synonyms:LHB1B2Imported
Ordered Locus Names:At2g34420Imported, At2g34420/T31E10.24Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G34420.

Subcellular locationi

  • Plastidchloroplast SAAS annotation
  • Plastidchloroplast thylakoid membrane SAAS annotation

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast envelope Source: GO_Central
  • chloroplast thylakoid Source: TAIR
  • chloroplast thylakoid membrane Source: TAIR
  • integral component of membrane Source: UniProtKB-KW
  • membrane Source: TAIR
  • photosystem I Source: UniProtKB-KW
  • plastoglobule Source: TAIR
  • thylakoid Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

ChloroplastSAAS annotation, Membrane, Photosystem ISAAS annotation, Plastid, ThylakoidSAAS annotation

PTM / Processingi

PTM databases

iPTMnetiQ39141.

Interactioni

Subunit structurei

The LHC complex consists of chlorophyll a-b binding proteins.SAAS annotation

Protein-protein interaction databases

IntActiQ39141. 1 interaction.
STRINGi3702.AT2G34420.1.

Structurei

3D structure databases

SMRiQ39141. Positions 46-254.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.SAAS annotation

Keywords - Domaini

TransmembraneSAAS annotation

Phylogenomic databases

eggNOGiENOG410IU0X. Eukaryota.
ENOG410ZHBU. LUCA.
HOGENOMiHOG000238032.
KOiK08912.
OMAiFTMRKTA.
PhylomeDBiQ39141.

Family and domain databases

Gene3Di1.10.3460.10. 1 hit.
InterProiIPR001344. Chloro_AB-bd_pln.
IPR022796. Chloroa_b-bind.
IPR023329. Chlorophyll_a/b-bd_dom.
[Graphical view]
PANTHERiPTHR21649. PTHR21649. 1 hit.
PfamiPF00504. Chloroa_b-bind. 1 hit.
[Graphical view]
SUPFAMiSSF103511. SSF103511. 1 hit.

Sequencei

Sequence statusi: Complete.

Q39141-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG
60 70 80 90 100
SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
110 120 130 140 150
SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL
160 170 180 190 200
VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
210 220 230 240 250
TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV
260
NNNAWAFATN FVPGK
Length:265
Mass (Da):28,054
Last modified:November 1, 1996 - v1
Checksum:iD36BEDFB75E5D0D2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004077 Genomic DNA. Translation: AAC26710.1.
AF372886 mRNA. Translation: AAK49602.1.
AY039561 mRNA. Translation: AAK62616.1.
AY045806 mRNA. Translation: AAK76480.1.
AF428397 mRNA. Translation: AAL16165.1.
AF419548 mRNA. Translation: AAL31882.1.
AF419587 mRNA. Translation: AAL31919.1.
AY065125 mRNA. Translation: AAL38301.1.
AY079101 mRNA. Translation: AAL84985.1.
AY079110 mRNA. Translation: AAL84994.1.
AY081587 mRNA. Translation: AAM10149.1.
AC004481 Genomic DNA. Translation: AAM14954.1.
AY142513 mRNA. Translation: AAN13114.1.
CP002685 Genomic DNA. Translation: AEC08972.1.
AK229627 mRNA. Translation: BAF01472.1.
X64460 Genomic DNA. Translation: CAA45790.1.
PIRiS23546.
RefSeqiNP_565786.1. NM_128994.3.
UniGeneiAt.10812.
At.23647.
At.24064.
At.24351.
At.24888.
At.27457.
At.32199.
At.66422.
At.71003.
At.71384.
At.71449.
At.71528.

Genome annotation databases

EnsemblPlantsiAT2G34420.1; AT2G34420.1; AT2G34420.
GeneIDi818005.
GrameneiAT2G34420.1; AT2G34420.1; AT2G34420.
KEGGiath:AT2G34420.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004077 Genomic DNA. Translation: AAC26710.1.
AF372886 mRNA. Translation: AAK49602.1.
AY039561 mRNA. Translation: AAK62616.1.
AY045806 mRNA. Translation: AAK76480.1.
AF428397 mRNA. Translation: AAL16165.1.
AF419548 mRNA. Translation: AAL31882.1.
AF419587 mRNA. Translation: AAL31919.1.
AY065125 mRNA. Translation: AAL38301.1.
AY079101 mRNA. Translation: AAL84985.1.
AY079110 mRNA. Translation: AAL84994.1.
AY081587 mRNA. Translation: AAM10149.1.
AC004481 Genomic DNA. Translation: AAM14954.1.
AY142513 mRNA. Translation: AAN13114.1.
CP002685 Genomic DNA. Translation: AEC08972.1.
AK229627 mRNA. Translation: BAF01472.1.
X64460 Genomic DNA. Translation: CAA45790.1.
PIRiS23546.
RefSeqiNP_565786.1. NM_128994.3.
UniGeneiAt.10812.
At.23647.
At.24064.
At.24351.
At.24888.
At.27457.
At.32199.
At.66422.
At.71003.
At.71384.
At.71449.
At.71528.

3D structure databases

SMRiQ39141. Positions 46-254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ39141. 1 interaction.
STRINGi3702.AT2G34420.1.

PTM databases

iPTMnetiQ39141.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G34420.1; AT2G34420.1; AT2G34420.
GeneIDi818005.
GrameneiAT2G34420.1; AT2G34420.1; AT2G34420.
KEGGiath:AT2G34420.

Organism-specific databases

TAIRiAT2G34420.

Phylogenomic databases

eggNOGiENOG410IU0X. Eukaryota.
ENOG410ZHBU. LUCA.
HOGENOMiHOG000238032.
KOiK08912.
OMAiFTMRKTA.
PhylomeDBiQ39141.

Family and domain databases

Gene3Di1.10.3460.10. 1 hit.
InterProiIPR001344. Chloro_AB-bd_pln.
IPR022796. Chloroa_b-bind.
IPR023329. Chlorophyll_a/b-bd_dom.
[Graphical view]
PANTHERiPTHR21649. PTHR21649. 1 hit.
PfamiPF00504. Chloroa_b-bind. 1 hit.
[Graphical view]
SUPFAMiSSF103511. SSF103511. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence of the fourth and fifth Photosystem II type I chlorophyll a/b-binding protein genes of Arabidopsis thaliana and evidence for the presence of a full complement of the extended CAB gene family."
    McGrath J.M., Terzaghi W.B., Sridhar P., Cashmore A.R., Pichersky E.
    Plant Mol. Biol. 19:725-733(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ColumbiaImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE.
  7. Cited for: NUCLEOTIDE SEQUENCE.
  8. Cited for: NUCLEOTIDE SEQUENCE.
  9. Cited for: NUCLEOTIDE SEQUENCE.
  10. Cited for: NUCLEOTIDE SEQUENCE.
  11. Cited for: NUCLEOTIDE SEQUENCE.
  12. Town C.D., Kaul S.
    Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  13. Cited for: NUCLEOTIDE SEQUENCE.
  14. Cited for: NUCLEOTIDE SEQUENCE.
  15. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.
    , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  16. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  17. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ39141_ARATH
AccessioniPrimary (citable) accession number: Q39141
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 134 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.