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Protein

Ethylene-responsive transcription factor TINY

Gene

TINY

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Putative transcriptional activator.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi35 – 92AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA binding transcription factor activity Source: TAIR

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor TINY
Gene namesi
Name:TINY
Synonyms:ERF040
Ordered Locus Names:At5g25810
ORF Names:F18A17.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G25810
TAIRilocus:2145249 AT5G25810

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001125701 – 218Ethylene-responsive transcription factor TINYAdd BLAST218

Proteomic databases

PaxDbiQ39127

Expressioni

Inductioni

Slightly induced by cold stress.1 Publication

Gene expression databases

ExpressionAtlasiQ39127 baseline and differential
GenevisibleiQ39127 AT

Interactioni

Protein-protein interaction databases

BioGridi17925, 2 interactors
IntActiQ39127, 1 interactor
STRINGi3702.AT5G25810.1

Structurei

3D structure databases

ProteinModelPortaliQ39127
SMRiQ39127
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi40 – 58Nuclear localization signalSequence analysisAdd BLAST19

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi122 – 153Ser-richAdd BLAST32

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410IVY9 Eukaryota
ENOG410YK37 LUCA
HOGENOMiHOG000237624
InParanoidiQ39127
KOiK09286
OMAiWDLQGLY
OrthoDBiEOG09360N5C
PhylomeDBiQ39127

Family and domain databases

CDDicd00018 AP2, 1 hit
Gene3Di3.30.730.10, 1 hit
InterProiView protein in InterPro
IPR001471 AP2/ERF_dom
IPR036955 AP2/ERF_dom_sf
IPR016177 DNA-bd_dom_sf
PfamiView protein in Pfam
PF00847 AP2, 1 hit
PRINTSiPR00367 ETHRSPELEMNT
SMARTiView protein in SMART
SM00380 AP2, 1 hit
SUPFAMiSSF54171 SSF54171, 1 hit
PROSITEiView protein in PROSITE
PS51032 AP2_ERF, 1 hit

Sequencei

Sequence statusi: Complete.

Q39127-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIASESTKSW EASAVRQENE EEKKKPVKDS GKHPVYRGVR KRNWGKWVSE
60 70 80 90 100
IREPRKKSRI WLGTFPSPEM AARAHDVAAL SIKGASAILN FPDLAGSFPR
110 120 130 140 150
PSSLSPRDIQ VAALKAAHME TSQSFSSSSS LTFSSSQSSS SLESLVSSSA
160 170 180 190 200
TGSEELGEIV ELPSLGSSYD GLTQLGNEFI FSDSADLWPY PPQWSEGDYQ
210
MIPASLSQDW DLQGLYNY
Length:218
Mass (Da):23,942
Last modified:November 1, 1996 - v1
Checksum:i4A343A95EE188B0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X94698 mRNA Translation: CAA64359.1
AY560855 mRNA Translation: AAT44922.1
AC005405 Genomic DNA Translation: AAC29139.1
CP002688 Genomic DNA Translation: AED93490.1
BT024923 mRNA Translation: ABD94079.1
PIRiT01076
RefSeqiNP_197953.1, NM_122482.3
UniGeneiAt.5373

Genome annotation databases

EnsemblPlantsiAT5G25810.1; AT5G25810.1; AT5G25810
GeneIDi832650
GrameneiAT5G25810.1; AT5G25810.1; AT5G25810
KEGGiath:AT5G25810

Similar proteinsi

Entry informationi

Entry nameiTINY_ARATH
AccessioniPrimary (citable) accession number: Q39127
Secondary accession number(s): Q6J9S0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: November 1, 1996
Last modified: April 25, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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