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Protein

Ethylene-responsive transcription factor TINY

Gene

TINY

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Putative transcriptional activator.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi35 – 92AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor TINY
Gene namesi
Name:TINY
Synonyms:ERF040
Ordered Locus Names:At5g25810
ORF Names:F18A17.60
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G25810.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001125701 – 218Ethylene-responsive transcription factor TINYAdd BLAST218

Proteomic databases

PaxDbiQ39127.

Expressioni

Inductioni

Slightly induced by cold stress.1 Publication

Gene expression databases

GenevisibleiQ39127. AT.

Interactioni

Protein-protein interaction databases

BioGridi17925. 2 interactors.
IntActiQ39127. 1 interactor.
STRINGi3702.AT5G25810.1.

Structurei

3D structure databases

ProteinModelPortaliQ39127.
SMRiQ39127.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi40 – 58Nuclear localization signalSequence analysisAdd BLAST19

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi122 – 153Ser-richAdd BLAST32

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IVY9. Eukaryota.
ENOG410YK37. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ39127.
KOiK09286.
OMAiNDFVFAD.
OrthoDBiEOG09360N5C.
PhylomeDBiQ39127.

Family and domain databases

CDDicd00018. AP2. 1 hit.
Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39127-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIASESTKSW EASAVRQENE EEKKKPVKDS GKHPVYRGVR KRNWGKWVSE
60 70 80 90 100
IREPRKKSRI WLGTFPSPEM AARAHDVAAL SIKGASAILN FPDLAGSFPR
110 120 130 140 150
PSSLSPRDIQ VAALKAAHME TSQSFSSSSS LTFSSSQSSS SLESLVSSSA
160 170 180 190 200
TGSEELGEIV ELPSLGSSYD GLTQLGNEFI FSDSADLWPY PPQWSEGDYQ
210
MIPASLSQDW DLQGLYNY
Length:218
Mass (Da):23,942
Last modified:November 1, 1996 - v1
Checksum:i4A343A95EE188B0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X94698 mRNA. Translation: CAA64359.1.
AY560855 mRNA. Translation: AAT44922.1.
AC005405 Genomic DNA. Translation: AAC29139.1.
CP002688 Genomic DNA. Translation: AED93490.1.
BT024923 mRNA. Translation: ABD94079.1.
PIRiT01076.
RefSeqiNP_197953.1. NM_122482.3.
UniGeneiAt.5373.

Genome annotation databases

EnsemblPlantsiAT5G25810.1; AT5G25810.1; AT5G25810.
GeneIDi832650.
GrameneiAT5G25810.1; AT5G25810.1; AT5G25810.
KEGGiath:AT5G25810.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X94698 mRNA. Translation: CAA64359.1.
AY560855 mRNA. Translation: AAT44922.1.
AC005405 Genomic DNA. Translation: AAC29139.1.
CP002688 Genomic DNA. Translation: AED93490.1.
BT024923 mRNA. Translation: ABD94079.1.
PIRiT01076.
RefSeqiNP_197953.1. NM_122482.3.
UniGeneiAt.5373.

3D structure databases

ProteinModelPortaliQ39127.
SMRiQ39127.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi17925. 2 interactors.
IntActiQ39127. 1 interactor.
STRINGi3702.AT5G25810.1.

Proteomic databases

PaxDbiQ39127.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G25810.1; AT5G25810.1; AT5G25810.
GeneIDi832650.
GrameneiAT5G25810.1; AT5G25810.1; AT5G25810.
KEGGiath:AT5G25810.

Organism-specific databases

TAIRiAT5G25810.

Phylogenomic databases

eggNOGiENOG410IVY9. Eukaryota.
ENOG410YK37. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ39127.
KOiK09286.
OMAiNDFVFAD.
OrthoDBiEOG09360N5C.
PhylomeDBiQ39127.

Miscellaneous databases

PROiQ39127.

Gene expression databases

GenevisibleiQ39127. AT.

Family and domain databases

CDDicd00018. AP2. 1 hit.
Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiTINY_ARATH
AccessioniPrimary (citable) accession number: Q39127
Secondary accession number(s): Q6J9S0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.