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Protein

Zinc finger protein ZAT1

Gene

ZAT1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor that may be involved in stress responses.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri5 – 2723C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri160 – 18223C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri209 – 23123C2H2-type 3PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein ZAT1
Gene namesi
Name:ZAT1
Ordered Locus Names:At1g02030
ORF Names:T7I23.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G02030.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 267267Zinc finger protein ZAT1PRO_0000409710Add
BLAST

Proteomic databases

PaxDbiQ39092.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G02030.1.

Structurei

3D structure databases

ProteinModelPortaliQ39092.
SMRiQ39092. Positions 2-35, 152-183, 201-235.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 3 C2H2-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri5 – 2723C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri160 – 18223C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri209 – 23123C2H2-type 3PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
HOGENOMiHOG000239319.
InParanoidiQ39092.
OMAiDEFKSCK.
PhylomeDBiQ39092.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 3 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 3 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39092-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV
60 70 80 90 100
LQDRESETES SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI
110 120 130 140 150
GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE
160 170 180 190 200
RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
210 220 230 240 250
KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID
260
LNLPAPSEEE EMASSVF
Length:267
Mass (Da):30,182
Last modified:November 1, 1996 - v1
Checksum:i09FAD779FB67BBF5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X98669 Genomic DNA. Translation: CAA67227.1.
U89959 Genomic DNA. Translation: AAC24367.1.
CP002684 Genomic DNA. Translation: AEE27369.1.
AB493421 mRNA. Translation: BAH30259.1.
PIRiT52381.
RefSeqiNP_171705.1. NM_100083.1.
UniGeneiAt.64820.

Genome annotation databases

EnsemblPlantsiAT1G02030.1; AT1G02030.1; AT1G02030.
GeneIDi839285.
GrameneiAT1G02030.1; AT1G02030.1; AT1G02030.
KEGGiath:AT1G02030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X98669 Genomic DNA. Translation: CAA67227.1.
U89959 Genomic DNA. Translation: AAC24367.1.
CP002684 Genomic DNA. Translation: AEE27369.1.
AB493421 mRNA. Translation: BAH30259.1.
PIRiT52381.
RefSeqiNP_171705.1. NM_100083.1.
UniGeneiAt.64820.

3D structure databases

ProteinModelPortaliQ39092.
SMRiQ39092. Positions 2-35, 152-183, 201-235.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G02030.1.

Proteomic databases

PaxDbiQ39092.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G02030.1; AT1G02030.1; AT1G02030.
GeneIDi839285.
GrameneiAT1G02030.1; AT1G02030.1; AT1G02030.
KEGGiath:AT1G02030.

Organism-specific databases

TAIRiAT1G02030.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
HOGENOMiHOG000239319.
InParanoidiQ39092.
OMAiDEFKSCK.
PhylomeDBiQ39092.

Miscellaneous databases

PROiQ39092.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 3 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 3 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Isolation and characterisation of a diverse family of Arabidopsis two and three-fingered protein genes and cDNA's."
    Meissner R., Michael A.J.
    Plant Mol. Biol. 33:615-624(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "ORF cloning and analysis of Arabidopsis transcription factor genes."
    Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y., Takagi M.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiZAT1_ARATH
AccessioniPrimary (citable) accession number: Q39092
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 28, 2011
Last sequence update: November 1, 1996
Last modified: February 17, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.