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Protein

Dof zinc finger protein DOF3.4

Gene

DOF3.4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri30 – 8455Dof-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: TAIR
  • metal ion binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • transcription regulatory region DNA binding Source: TAIR

GO - Biological processi

  • cell wall modification Source: TAIR
  • positive regulation of cell cycle Source: TAIR
  • positive regulation of transcription, DNA-templated Source: TAIR
  • response to auxin Source: TAIR
  • response to salicylic acid Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF3.4
Short name:
AtDOF3.4
Alternative name(s):
OBF-binding protein 1
Gene namesi
Name:DOF3.4
Synonyms:OBP1
Ordered Locus Names:At3g50410
ORF Names:F11C1_250
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G50410.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 253253Dof zinc finger protein DOF3.4PRO_0000074280Add
BLAST

Proteomic databases

PaxDbiQ39088.
PRIDEiQ39088.

Expressioni

Tissue specificityi

Constitutively expressed in the whole plant.2 Publications

Inductioni

By auxin and salicylic acid (SA).1 Publication

Gene expression databases

GenevisibleiQ39088. AT.

Interactioni

Subunit structurei

Interacts with OBF4 or OBF5.1 Publication

Protein-protein interaction databases

BioGridi9523. 1 interaction.
IntActiQ39088. 1 interaction.
STRINGi3702.AT3G50410.1.

Structurei

3D structure databases

ProteinModelPortaliQ39088.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi90 – 989Poly-Ser

Sequence similaritiesi

Contains 1 Dof-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri30 – 8455Dof-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IX5E. Eukaryota.
ENOG4111CPJ. LUCA.
HOGENOMiHOG000005865.
InParanoidiQ39088.
OMAiPRDYHHA.
OrthoDBiEOG09360OA5.
PhylomeDBiQ39088.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q39088-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF
60 70 80 90 100
SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
110 120 130 140 150
VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL
160 170 180 190 200
NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
210 220 230 240 250
TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN

SLK
Length:253
Mass (Da):26,382
Last modified:October 25, 2004 - v2
Checksum:i3A64EA3F6CF0A5D1
GO

Sequence cautioni

The sequence CAA61485 differs from that shown. Reason: Frameshift at position 4. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti155 – 1551A → R in CAA61485 (PubMed:8718629).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X89192 mRNA. Translation: CAA61485.1. Frameshift.
AL132976 Genomic DNA. Translation: CAB88324.1.
CP002686 Genomic DNA. Translation: AEE78664.1.
PIRiT46072.
RefSeqiNP_190610.1. NM_114901.3.
UniGeneiAt.20758.

Genome annotation databases

EnsemblPlantsiAT3G50410.1; AT3G50410.1; AT3G50410.
GeneIDi824205.
GrameneiAT3G50410.1; AT3G50410.1; AT3G50410.
KEGGiath:AT3G50410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X89192 mRNA. Translation: CAA61485.1. Frameshift.
AL132976 Genomic DNA. Translation: CAB88324.1.
CP002686 Genomic DNA. Translation: AEE78664.1.
PIRiT46072.
RefSeqiNP_190610.1. NM_114901.3.
UniGeneiAt.20758.

3D structure databases

ProteinModelPortaliQ39088.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9523. 1 interaction.
IntActiQ39088. 1 interaction.
STRINGi3702.AT3G50410.1.

Proteomic databases

PaxDbiQ39088.
PRIDEiQ39088.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G50410.1; AT3G50410.1; AT3G50410.
GeneIDi824205.
GrameneiAT3G50410.1; AT3G50410.1; AT3G50410.
KEGGiath:AT3G50410.

Organism-specific databases

TAIRiAT3G50410.

Phylogenomic databases

eggNOGiENOG410IX5E. Eukaryota.
ENOG4111CPJ. LUCA.
HOGENOMiHOG000005865.
InParanoidiQ39088.
OMAiPRDYHHA.
OrthoDBiEOG09360OA5.
PhylomeDBiQ39088.

Miscellaneous databases

PROiQ39088.

Gene expression databases

GenevisibleiQ39088. AT.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiDOF34_ARATH
AccessioniPrimary (citable) accession number: Q39088
Secondary accession number(s): Q9M2R8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: October 25, 2004
Last modified: September 7, 2016
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.