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Protein

Dof zinc finger protein DOF3.4

Gene

DOF3.4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri30 – 84Dof-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

  • DNA binding Source: TAIR
  • DNA binding transcription factor activity Source: TAIR
  • metal ion binding Source: UniProtKB-KW
  • transcription regulatory region DNA binding Source: TAIR

GO - Biological processi

  • cell wall modification Source: TAIR
  • positive regulation of cell cycle Source: TAIR
  • positive regulation of transcription, DNA-templated Source: TAIR
  • response to auxin Source: TAIR
  • response to salicylic acid Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF3.4
Short name:
AtDOF3.4
Alternative name(s):
OBF-binding protein 1
Gene namesi
Name:DOF3.4
Synonyms:OBP1
Ordered Locus Names:At3g50410
ORF Names:F11C1_250
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G50410
TAIRilocus:2074850 AT3G50410

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000742801 – 253Dof zinc finger protein DOF3.4Add BLAST253

Proteomic databases

PaxDbiQ39088
PRIDEiQ39088

Expressioni

Tissue specificityi

Constitutively expressed in the whole plant.2 Publications

Inductioni

By auxin and salicylic acid (SA).1 Publication

Gene expression databases

ExpressionAtlasiQ39088 baseline and differential
GenevisibleiQ39088 AT

Interactioni

Subunit structurei

Interacts with OBF4 or OBF5.1 Publication

Protein-protein interaction databases

BioGridi9523, 1 interactor
IntActiQ39088, 1 interactor
STRINGi3702.AT3G50410.1

Structurei

3D structure databases

ProteinModelPortaliQ39088
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi90 – 98Poly-Ser9

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri30 – 84Dof-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IX5E Eukaryota
ENOG4111CPJ LUCA
HOGENOMiHOG000005865
InParanoidiQ39088
OMAiMCGSFTS
OrthoDBiEOG09360OA5
PhylomeDBiQ39088

Family and domain databases

InterProiView protein in InterPro
IPR003851 Znf_Dof
PfamiView protein in Pfam
PF02701 zf-Dof, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD007478 Znf_Dof, 1 hit
PROSITEiView protein in PROSITE
PS01361 ZF_DOF_1, 1 hit
PS50884 ZF_DOF_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q39088-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF
60 70 80 90 100
SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
110 120 130 140 150
VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL
160 170 180 190 200
NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
210 220 230 240 250
TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN

SLK
Length:253
Mass (Da):26,382
Last modified:October 25, 2004 - v2
Checksum:i3A64EA3F6CF0A5D1
GO

Sequence cautioni

The sequence CAA61485 differs from that shown. Reason: Frameshift at position 4.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti155A → R in CAA61485 (PubMed:8718629).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X89192 mRNA Translation: CAA61485.1 Frameshift.
AL132976 Genomic DNA Translation: CAB88324.1
CP002686 Genomic DNA Translation: AEE78664.1
PIRiT46072
RefSeqiNP_190610.1, NM_114901.4
UniGeneiAt.20758

Genome annotation databases

EnsemblPlantsiAT3G50410.1; AT3G50410.1; AT3G50410
GeneIDi824205
GrameneiAT3G50410.1; AT3G50410.1; AT3G50410
KEGGiath:AT3G50410

Similar proteinsi

Entry informationi

Entry nameiDOF34_ARATH
AccessioniPrimary (citable) accession number: Q39088
Secondary accession number(s): Q9M2R8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: October 25, 2004
Last modified: May 23, 2018
This is version 108 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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