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Q39013 (NAC2_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
NAC domain-containing protein 2
Short name=ANAC002
Gene names
Name:NAC002
Synonyms:ATAF1
Ordered Locus Names:At1g01720
ORF Names:T1N6.12
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length289 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus Potential.

Domain

The NAC domain includes a DNA-binding domain and a dimerization domain.

Sequence similarities

Contains 1 NAC domain.

Sequence caution

The sequence CAA52771.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 289289NAC domain-containing protein 2
PRO_0000132306

Regions

Domain7 – 158152NAC

Sequences

Sequence LengthMass (Da)Tools
Q39013 [UniParc].

Last modified August 16, 2004. Version 2.
Checksum: DDAC62A101B6CE4B

FASTA28932,922
        10         20         30         40         50         60 
MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE 

        70         80         90        100        110        120 
KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP KPVGIKKALV FYAGKAPKGE 

       130        140        150        160        170        180 
KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE 

       190        200        210        220        230        240 
KPKVTEMVMP PPPQQTSEFA YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW 

       250        260        270        280 
SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY

« Hide

References

« Hide 'large scale' references
[1]Rueth J., Schweyen R., Hirt H.
Submitted (AUG-1993) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[5]"Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana."
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.
DNA Res. 10:239-247(2003) [PubMed: 15029955] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		X74755 mRNA. Translation: CAA52771.1. Different initiation.
AC009273 Genomic DNA. Translation: AAF78403.1.
CP002684 Genomic DNA. Translation: AEE27326.1.
AF370617 mRNA. Translation: AAK43936.1.
IPIIPI00547269.
PIRE86148.
S37101.
RefSeqNP_171677.1. NM_100054.2.
UniGeneAt.134.
At.57938.

3D structure databases

ProteinModelPortalQ39013.
SMRQ39013. Positions 5-159.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ39013.

Proteomic databases

PRIDEQ39013.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G01720.1; AT1G01720.1; AT1G01720.
GeneID839265.
GenomeReviewsGene locus AT1G01720 in contig CT485782_GR.
KEGGath:AT1G01720.
NMPDRfig|3702.1.peg.283.

Organism-specific databases

GeneFarm4060.
TAIRAt1g01720.

Phylogenomic databases

GeneTreeEPGT00070000027899.
HOGENOMHBG750044.
InParanoidQ39013.
OMAEIMEEKP.
PhylomeDBQ39013.
ProtClustDBCLSN2714451.

Gene expression databases

ArrayExpressQ39013.
GenevestigatorQ39013.
GermOnlineAT1G01720. Arabidopsis thaliana.

Family and domain databases

InterProIPR003441. NAM.
[Graphical view]
PfamPF02365. NAM. 1 hit.
[Graphical view]
SUPFAMSSF101941. NAM. 1 hit.
PROSITEPS51005. NAC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNAC2_ARATH
AccessionPrimary (citable) accession number: Q39013
Secondary accession number(s): Q9LQ85
Entry history
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: August 16, 2004
Last modified: December 14, 2011
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents