Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q38XI0 (DEOD_LACSS) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Purine nucleoside phosphorylase DeoD-type

Short name=PNP
EC=2.4.2.1
Gene names
Name:deoD
Ordered Locus Names:LCA_0797
OrganismLactobacillus sakei subsp. sakei (strain 23K) [Complete proteome] [HAMAP]
Taxonomic identifier314315 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus

Protein attributes

Sequence length234 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Subunit structure

Homohexamer By similarity. HAMAP-Rule MF_01627

Sequence similarities

Belongs to the PNP/UDP phosphorylase family.

Ontologies

Keywords
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpurine nucleoside metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionpurine-nucleoside phosphorylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 234234Purine nucleoside phosphorylase DeoD-type HAMAP-Rule MF_01627
PRO_1000186210

Sequences

Sequence LengthMass (Da)Tools
Q38XI0 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: EE90E3B126B9984E

FASTA23425,522
        10         20         30         40         50         60 
MSTHIEAQQG DIAETVLLPG DPLRAKYIAE TFLTDVHRYN TIRNAFGYTG YYKGQAISVQ 

        70         80         90        100        110        120 
ASGMGIPSIS IYANELIQFY GVKRLIRVGT CGGLGTDVHV RDVMIAQSAS TDSAIIQNTF 

       130        140        150        160        170        180 
GAGLYYAPTA DFKLLMKAYQ AAQQAQIAVK VGNILSEDRF YNDEIDRQKL IQYGVLGSEM 

       190        200        210        220        230 
EAAALYMLAA KFNVQALAVL TISNHIITGE ETSAEEREKS FNEMITVALE AGIA 

« Hide

References

[1]"The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K."
Chaillou S., Champomier-Verges M.-C., Cornet M., Crutz-Le Coq A.-M., Dudez A.-M., Martin V., Beaufils S., Darbon-Rongere E., Bossy R., Loux V., Zagorec M.
Nat. Biotechnol. 23:1527-1533(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 23K.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR936503 Genomic DNA. Translation: CAI55101.1.
RefSeqYP_395410.1. NC_007576.1.

3D structure databases

ProteinModelPortalQ38XI0.
SMRQ38XI0. Positions 1-233.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING314315.LSA0797.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAI55101; CAI55101; LCA_0797.
GeneID3778271.
KEGGlsa:LSA0797.
PATRIC22274414. VBILacSak116432_0774.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0813.
KOK03784.
OMASVHIGAE.
OrthoDBEOG6BKJC5.
ProtClustDBPRK05819.

Enzyme and pathway databases

BioCycLSAK314315:GCKE-1465-MONOMER.

Family and domain databases

Gene3D3.40.50.1580. 1 hit.
HAMAPMF_01627. Pur_nucleosid_phosp.
InterProIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERPTHR21234. PTHR21234. 1 hit.
PfamPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMSSF53167. SSF53167. 1 hit.
TIGRFAMsTIGR00107. deoD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOD_LACSS
AccessionPrimary (citable) accession number: Q38XI0
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: November 22, 2005
Last modified: April 16, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families