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Q38FV6

- Q38FV6_TRYB2

UniProt

Q38FV6 - Q38FV6_TRYB2

Protein
Submitted name:

60S ribosomal protein L38, putative

Gene

Tb09.160.0815

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    60S ribosomal protein L38, putativeImported
    Gene namesi
    ORF Names:Tb09.160.0815Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 9

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Protein-protein interaction databases

    STRINGi5691.Tb09.160.0815.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZF7electron microscopy5.57p1-82[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L38e family.UniRule annotation

    Phylogenomic databases

    eggNOGiNOG323549.
    HOGENOMiHOG000188979.
    KOiK02923.
    OMAiRKDASQA.

    Family and domain databases

    InterProiIPR002675. Ribosomal_L38e.
    [Graphical view]
    PANTHERiPTHR10965. PTHR10965. 1 hit.
    PfamiPF01781. Ribosomal_L38e. 1 hit.
    [Graphical view]
    ProDomiPD010361. Ribosomal_L38e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    Q38FV6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPREIKNLKE FLAICSRKDA RCVKVKHNPK VTKFKVRCSR HLYTLVMADK   50
    KKADKIERSI HPSVKKITVT SRSHANKNTP SK 82
    Length:82
    Mass (Da):9,500
    Last modified:November 22, 2005 - v1
    Checksum:i714F762583347E19
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000207 Genomic DNA. Translation: EAN76314.1.
    RefSeqiXP_803515.1. XM_798422.1.

    Genome annotation databases

    EnsemblProtistsiEAN76314; EAN76314; Tb09.160.0815.
    GeneIDi3660239.
    KEGGitbr:Tb09.160.0815.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000207 Genomic DNA. Translation: EAN76314.1 .
    RefSeqi XP_803515.1. XM_798422.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZF7 electron microscopy 5.57 p 1-82 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 5691.Tb09.160.0815.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi EAN76314 ; EAN76314 ; Tb09.160.0815 .
    GeneIDi 3660239.
    KEGGi tbr:Tb09.160.0815.

    Phylogenomic databases

    eggNOGi NOG323549.
    HOGENOMi HOG000188979.
    KOi K02923.
    OMAi RKDASQA.

    Family and domain databases

    InterProi IPR002675. Ribosomal_L38e.
    [Graphical view ]
    PANTHERi PTHR10965. PTHR10965. 1 hit.
    Pfami PF01781. Ribosomal_L38e. 1 hit.
    [Graphical view ]
    ProDomi PD010361. Ribosomal_L38e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    2. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ38FV6_TRYB2
    AccessioniPrimary (citable) accession number: Q38FV6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3