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Q38CY8

- Q38CY8_TRYB2

UniProt

Q38CY8 - Q38CY8_TRYB2

Protein
Submitted name:

60S ribosomal protein L5, putative

Gene

Tb09.244.2730

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    60S ribosomal protein L5, putativeImported
    Gene namesi
    ORF Names:Tb09.244.2730Imported, Tb09.244.2740Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 9

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Protein-protein interaction databases

    STRINGi5691.Tb09.244.2740.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZF7electron microscopy5.57u1-308[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0256.
    HOGENOMiHOG000105947.
    KOiK02932.
    OMAiKEPPKEH.

    Family and domain databases

    HAMAPiMF_01337_A. Ribosomal_L18_A.
    InterProiIPR005485. Rbsml_L5_euk/L18_arc.
    IPR025607. Rbsml_L5e/L18P_C.
    IPR005484. Ribosomal_L18/L5.
    [Graphical view]
    PANTHERiPTHR23410. PTHR23410. 1 hit.
    PfamiPF14204. Ribosomal_L18_c. 1 hit.
    PF00861. Ribosomal_L18p. 1 hit.
    [Graphical view]
    PRINTSiPR00058. RIBOSOMALL5.

    Sequencei

    Sequence statusi: Complete.

    Q38CY8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTFVKVVKNK AYYKRFQVKY RRRREGKTDY HARRRMVLQD KTKFGTPKYR    50
    LVVRITNRDV IAQIVHAKVV GDEVVMAAYS HELPLFGIEH GLTNYAAAYA 100
    TGLLVARRML AKLGLAEKFV GVKEVDGSYA AVRTKDDDQG DDESRFPFKA 150
    ILDVGLARTT TGARVFGVLK GAVDGGLAVP HRPNRFPGYN KESDALNAKV 200
    HRDRIFGRHV ADYLKQVREE ASSNPDEKTC QFSKFIAAKV SPDDMEGMYK 250
    RAHAAIRADP TKRRAKKERP AEAKPKKYNT VKLTGAEKKA AAKAKVAAVI 300
    ERIRDRAK 308
    Length:308
    Mass (Da):34,636
    Last modified:November 22, 2005 - v1
    Checksum:i904463B57641A60B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000207 Genomic DNA. Translation: EAN77331.1.
    CM000207 Genomic DNA. Translation: EAN77332.1.
    RefSeqiXP_827661.1. XM_822568.1.
    XP_827662.1. XM_822569.1.

    Genome annotation databases

    EnsemblProtistsiEAN77331; EAN77331; Tb09.244.2740.
    EAN77332; EAN77332; Tb09.244.2730.
    GeneIDi3661199.
    3661200.
    KEGGitbr:Tb09.244.2730.
    tbr:Tb09.244.2740.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000207 Genomic DNA. Translation: EAN77331.1 .
    CM000207 Genomic DNA. Translation: EAN77332.1 .
    RefSeqi XP_827661.1. XM_822568.1.
    XP_827662.1. XM_822569.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZF7 electron microscopy 5.57 u 1-308 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 5691.Tb09.244.2740.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi EAN77331 ; EAN77331 ; Tb09.244.2740 .
    EAN77332 ; EAN77332 ; Tb09.244.2730 .
    GeneIDi 3661199.
    3661200.
    KEGGi tbr:Tb09.244.2730.
    tbr:Tb09.244.2740.

    Phylogenomic databases

    eggNOGi COG0256.
    HOGENOMi HOG000105947.
    KOi K02932.
    OMAi KEPPKEH.

    Family and domain databases

    HAMAPi MF_01337_A. Ribosomal_L18_A.
    InterProi IPR005485. Rbsml_L5_euk/L18_arc.
    IPR025607. Rbsml_L5e/L18P_C.
    IPR005484. Ribosomal_L18/L5.
    [Graphical view ]
    PANTHERi PTHR23410. PTHR23410. 1 hit.
    Pfami PF14204. Ribosomal_L18_c. 1 hit.
    PF00861. Ribosomal_L18p. 1 hit.
    [Graphical view ]
    PRINTSi PR00058. RIBOSOMALL5.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    2. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    3. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ38CY8_TRYB2
    AccessioniPrimary (citable) accession number: Q38CY8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3