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Protein
Submitted name:

60S ribosomal protein L5, putative

Gene

Tb09.244.2730

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. 5S rRNA binding Source: GeneDB
  2. structural constituent of ribosome Source: GeneDB

GO - Biological processi

  1. ribosome assembly Source: GeneDB
  2. translation Source: GeneDB
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L5, putativeImported
Gene namesi
ORF Names:Tb09.244.2730Imported, Tb09.244.2740Imported
OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
Taxonomic identifieri185431 [NCBI]
Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
ProteomesiUP000008524 Componenti: Chromosome 9

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: GeneDB
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi5691.Tb09.244.2740.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V8Melectron microscopy5.57Bu1-308[»]
ProteinModelPortaliQ38CY8.
SMRiQ38CY8. Positions 11-256.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0256.
HOGENOMiHOG000105947.
InParanoidiQ38CY8.
KOiK02932.
OMAiMAAYSHE.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
IPR005484. Ribosomal_L18/L5.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.

Sequencei

Sequence statusi: Complete.

Q38CY8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFVKVVKNK AYYKRFQVKY RRRREGKTDY HARRRMVLQD KTKFGTPKYR
60 70 80 90 100
LVVRITNRDV IAQIVHAKVV GDEVVMAAYS HELPLFGIEH GLTNYAAAYA
110 120 130 140 150
TGLLVARRML AKLGLAEKFV GVKEVDGSYA AVRTKDDDQG DDESRFPFKA
160 170 180 190 200
ILDVGLARTT TGARVFGVLK GAVDGGLAVP HRPNRFPGYN KESDALNAKV
210 220 230 240 250
HRDRIFGRHV ADYLKQVREE ASSNPDEKTC QFSKFIAAKV SPDDMEGMYK
260 270 280 290 300
RAHAAIRADP TKRRAKKERP AEAKPKKYNT VKLTGAEKKA AAKAKVAAVI

ERIRDRAK
Length:308
Mass (Da):34,636
Last modified:November 22, 2005 - v1
Checksum:i904463B57641A60B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000207 Genomic DNA. Translation: EAN77331.1.
CM000207 Genomic DNA. Translation: EAN77332.1.
RefSeqiXP_827661.1. XM_822568.1.
XP_827662.1. XM_822569.1.

Genome annotation databases

GeneIDi3661199.
3661200.
KEGGitbr:Tb09.244.2730.
tbr:Tb09.244.2740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000207 Genomic DNA. Translation: EAN77331.1.
CM000207 Genomic DNA. Translation: EAN77332.1.
RefSeqiXP_827661.1. XM_822568.1.
XP_827662.1. XM_822569.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V8Melectron microscopy5.57Bu1-308[»]
ProteinModelPortaliQ38CY8.
SMRiQ38CY8. Positions 11-256.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5691.Tb09.244.2740.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi3661199.
3661200.
KEGGitbr:Tb09.244.2730.
tbr:Tb09.244.2740.

Phylogenomic databases

eggNOGiCOG0256.
HOGENOMiHOG000105947.
InParanoidiQ38CY8.
KOiK02932.
OMAiMAAYSHE.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
IPR005484. Ribosomal_L18/L5.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 927/4 GUTat10.1Imported.
  2. "The genome of the African trypanosome Trypanosoma brucei."
    Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
    , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
    Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 927/4 GUTat10.1Imported.
  3. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
    Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
    Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Entry informationi

Entry nameiQ38CY8_TRYB2
AccessioniPrimary (citable) accession number: Q38CY8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: April 29, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.