Q38CL9 (Q38CL9_TRYB2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
40S ribosomal protein S6 PIRNR PIRNR002129

Gene names

ORF Names:

Tb10.100.0080 EMBL EAN77451.1

Organism

Trypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]

Taxonomic identifier

999953 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Euglenozoa › Kinetoplastida › Trypanosomatidae › Trypanosoma › Trypanozoon › Trypanosoma brucei › Trypanosoma brucei brucei

Protein attributes

Sequence length	250 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S6e family. PIRNR PIRNR002129

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein PIRNR PIRNR002129 EMBL EAN77451.1
Technical term	3D-structure PDB 3ZEY Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q38CL9 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: 0E8D0D3411080D38	FASTA	250	28,440
	10 20 30 40 50 60 MKLNVAYPRN GTVKQVEVTD EVLRRVNLGD YRLGNEVDGA IFGEAFRGYT FKLRGGSDKE 70 80 90 100 110 120 GFPMVQGVMA PSRVSLLVKR GAVGFNTFRG YQGERRRKSL RGCILGSDIA VLNVTVEKVG 130 140 150 160 170 180 EQPIEGVTDV SVPRRLGPKR ANKIRKLFNL GRTDDVRKYV IRRKVTKEGK KDRFKAPKIQ 190 200 210 220 230 240 RLITSTIRAR RAKKVRVAID KVRKSAAERR EYLRLVGARR RAARQRKAAR HHSSRVNAQR 250 KEVDAFKARK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of the African trypanosome Trypanosoma brucei." Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A. Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 927/4 GUTat10.1 EMBL EAN77451.1.
[2]	"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome." Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J. Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CM000208 Genomic DNA. Translation: EAN77451.1.

RefSeq

XP_822279.1. XM_817186.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3ZEY	electron microscopy	5.57	3	1-250	[»]

ModBase

Search...

Protein-protein interaction databases

STRING

5691.Tb10.100.0080.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblProtists

EAN77451; EAN77451; Tb10.100.0080.

GeneID

3661495.

KEGG

tbr:Tb10.100.0080.

Phylogenomic databases

eggNOG

COG2125.

HOGENOM

HOG000190952.

KO

K02991.

OMA

MERRRSA.

ProtClustDB

CLSZ2443007.

Family and domain databases

InterPro

IPR014401. Ribosomal_S6_euk.
IPR001377. Ribosomal_S6e.
IPR018282. Ribosomal_S6e_CS.
[Graphical view]

PANTHER

PTHR11502. PTHR11502. 1 hit.

Pfam

PF01092. Ribosomal_S6e. 1 hit.
[Graphical view]

PIRSF

PIRSF002129. Ribosom_S6_euk. 1 hit.

PROSITE

PS00578. RIBOSOMAL_S6E. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q38CL9_TRYB2

Accession

Primary (citable) accession number: Q38CL9

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)