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Q38CL9

- Q38CL9_TRYB2

UniProt

Q38CL9 - Q38CL9_TRYB2

Protein

40S ribosomal protein S6

Gene

Tb10.100.0080

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S6UniRule annotation
    Gene namesi
    ORF Names:Tb10.100.0080Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 10

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Protein-protein interaction databases

    STRINGi5691.Tb10.100.0080.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZEYelectron microscopy5.5731-250[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S6e family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2125.
    HOGENOMiHOG000190952.
    KOiK02991.
    OMAiVITHEKT.

    Family and domain databases

    InterProiIPR014401. Ribosomal_S6_euk.
    IPR001377. Ribosomal_S6e.
    IPR018282. Ribosomal_S6e_CS.
    [Graphical view]
    PANTHERiPTHR11502. PTHR11502. 1 hit.
    PfamiPF01092. Ribosomal_S6e. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002129. Ribosom_S6_euk. 1 hit.
    PROSITEiPS00578. RIBOSOMAL_S6E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q38CL9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLNVAYPRN GTVKQVEVTD EVLRRVNLGD YRLGNEVDGA IFGEAFRGYT    50
    FKLRGGSDKE GFPMVQGVMA PSRVSLLVKR GAVGFNTFRG YQGERRRKSL 100
    RGCILGSDIA VLNVTVEKVG EQPIEGVTDV SVPRRLGPKR ANKIRKLFNL 150
    GRTDDVRKYV IRRKVTKEGK KDRFKAPKIQ RLITSTIRAR RAKKVRVAID 200
    KVRKSAAERR EYLRLVGARR RAARQRKAAR HHSSRVNAQR KEVDAFKARK 250
    Length:250
    Mass (Da):28,440
    Last modified:November 22, 2005 - v1
    Checksum:i0E8D0D3411080D38
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000208 Genomic DNA. Translation: EAN77451.1.
    RefSeqiXP_822279.1. XM_817186.1.

    Genome annotation databases

    EnsemblProtistsiEAN77451; EAN77451; Tb10.100.0080.
    GeneIDi3661495.
    KEGGitbr:Tb10.100.0080.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000208 Genomic DNA. Translation: EAN77451.1 .
    RefSeqi XP_822279.1. XM_817186.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZEY electron microscopy 5.57 3 1-250 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 5691.Tb10.100.0080.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi EAN77451 ; EAN77451 ; Tb10.100.0080 .
    GeneIDi 3661495.
    KEGGi tbr:Tb10.100.0080.

    Phylogenomic databases

    eggNOGi COG2125.
    HOGENOMi HOG000190952.
    KOi K02991.
    OMAi VITHEKT.

    Family and domain databases

    InterProi IPR014401. Ribosomal_S6_euk.
    IPR001377. Ribosomal_S6e.
    IPR018282. Ribosomal_S6e_CS.
    [Graphical view ]
    PANTHERi PTHR11502. PTHR11502. 1 hit.
    Pfami PF01092. Ribosomal_S6e. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002129. Ribosom_S6_euk. 1 hit.
    PROSITEi PS00578. RIBOSOMAL_S6E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    2. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ38CL9_TRYB2
    AccessioniPrimary (citable) accession number: Q38CL9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3