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Q38CL9 (Q38CL9_TRYB2) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
40S ribosomal protein S6 PIRNR PIRNR002129
Gene names
ORF Names:Tb10.100.0080 EMBL EAN77451.1
OrganismTrypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]
Taxonomic identifier999953 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma

Protein attributes

Sequence length250 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S6e family. PIRNR PIRNR002129

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein PIRNR PIRNR002129 EMBL EAN77451.1
   Technical term3D-structure PDB 3ZEY
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q38CL9 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 0E8D0D3411080D38

FASTA25028,440
        10         20         30         40         50         60 
MKLNVAYPRN GTVKQVEVTD EVLRRVNLGD YRLGNEVDGA IFGEAFRGYT FKLRGGSDKE 

        70         80         90        100        110        120 
GFPMVQGVMA PSRVSLLVKR GAVGFNTFRG YQGERRRKSL RGCILGSDIA VLNVTVEKVG 

       130        140        150        160        170        180 
EQPIEGVTDV SVPRRLGPKR ANKIRKLFNL GRTDDVRKYV IRRKVTKEGK KDRFKAPKIQ 

       190        200        210        220        230        240 
RLITSTIRAR RAKKVRVAID KVRKSAAERR EYLRLVGARR RAARQRKAAR HHSSRVNAQR 

       250 
KEVDAFKARK 

« Hide

References

« Hide 'large scale' references
[1]"The genome of the African trypanosome Trypanosoma brucei."
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. expand/collapse author list , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 927/4 GUTat10.1 EMBL EAN77451.1.
[2]"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000208 Genomic DNA. Translation: EAN77451.1.
RefSeqXP_822279.1. XM_817186.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZEYelectron microscopy5.5731-250[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING5691.Tb10.100.0080.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsEAN77451; EAN77451; Tb10.100.0080.
GeneID3661495.
KEGGtbr:Tb10.100.0080.

Phylogenomic databases

eggNOGCOG2125.
HOGENOMHOG000190952.
KOK02991.
OMAVITHEKT.

Family and domain databases

InterProIPR014401. Ribosomal_S6_euk.
IPR001377. Ribosomal_S6e.
IPR018282. Ribosomal_S6e_CS.
[Graphical view]
PANTHERPTHR11502. PTHR11502. 1 hit.
PfamPF01092. Ribosomal_S6e. 1 hit.
[Graphical view]
PIRSFPIRSF002129. Ribosom_S6_euk. 1 hit.
PROSITEPS00578. RIBOSOMAL_S6E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ38CL9_TRYB2
AccessionPrimary (citable) accession number: Q38CL9
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: May 14, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)