Q38CI4 (Q38CI4_TRYB2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
40S ribosomal proteins S11, putative EMBL EAN77486.1

Gene names

ORF Names:

Tb10.70.7695 EMBL EAN77486.1

Organism

Trypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]

Taxonomic identifier

999953 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Euglenozoa › Kinetoplastida › Trypanosomatidae › Trypanosoma › Trypanozoon › Trypanosoma brucei › Trypanosoma brucei brucei

Protein attributes

Sequence length	174 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S17P family. RuleBase RU003872

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003872 EMBL EAN77486.1
Technical term	3D-structure PDB 3ZEY Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q38CI4 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: E82812131C49EDE2	FASTA	174	20,087
	10 20 30 40 50 60 MTSKQENYAR TPTVDLTVQH EKAYQRQTAV NENIRTASKK HVNRSGHIRY SKKIGLGFAT 70 80 90 100 110 120 PKAAINGKYI DRKCPFTSNV SIRGRILRGV VHSTKMRRSI VIRRNYLHFI RKYQRYQKRH 130 140 150 160 170 RNITVHCSPC FDPKPGDEVV VGQCRPLSKT IRYNVLQVVS KSAADKMGKK FSKN

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of the African trypanosome Trypanosoma brucei." Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A. Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 927/4 GUTat10.1 EMBL EAN77486.1.
[2]	"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome." Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J. Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CM000208 Genomic DNA. Translation: EAN77486.1.

RefSeq

XP_822314.1. XM_817221.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3ZEY	electron microscopy	5.57	E	1-174	[»]

ProteinModelPortal

Q38CI4.

SMR

Q38CI4. Positions 85-158.

ModBase

Search...

Protein-protein interaction databases

STRING

5691.Tb10.70.7695.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblProtists

EAN77486; EAN77486; Tb10.70.7695.

GeneID

3663111.

KEGG

tbr:Tb10.70.7695.

Phylogenomic databases

eggNOG

COG0186.

HOGENOM

HOG000231341.

KO

K02949.

OMA

HVTIGQC.

ProtClustDB

PTZ00241.

Family and domain databases

Gene3D

2.40.50.140. 1 hit.

HAMAP

MF_01345_B. Ribosomal_S17_B.

InterPro

IPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
IPR019978. Ribosomal_S17_archaeal.
IPR019979. Ribosomal_S17_CS.
[Graphical view]

PANTHER

PTHR10744. PTHR10744. 1 hit.

Pfam

PF00366. Ribosomal_S17. 1 hit.
[Graphical view]

PRINTS

PR00973. RIBOSOMALS17.

ProDom

PD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]

SUPFAM

SSF50249. Nucleic_acid_OB. 1 hit.

TIGRFAMs

TIGR03630. arch_S17P. 1 hit.

PROSITE

PS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q38CI4_TRYB2

Accession

Primary (citable) accession number: Q38CI4

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	May 29, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)