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Q38CD1 (Q38CD1_TRYB2) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:Tb10.70.7020 EMBL EAN77539.1, Tb10.70.7030 EMBL EAN77538.1
OrganismTrypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]
Taxonomic identifier999953 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma

Protein attributes

Sequence length143 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S12P family. RuleBase RU003622

Sequences

Sequence LengthMass (Da)Tools
Q38CD1 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 9B5BC2A68EFA9DA3

FASTA14315,929
        10         20         30         40         50         60 
MTKTNGQHAA RKLVRLRRKN RWADKGWKKS HTFVAQKANP FGGSSHAKGI VLEKIGVGAK 

        70         80         90        100        110        120 
QPNSAIRKCV RVQLIKNDKK IIAFVPNDGC LHFIEENDEV LVSGFGRSGH AVGDIPGVRF 

       130        140 
KIVKVSSVGL YALYRQKKEK PRN 

« Hide

References

« Hide 'large scale' references
[1]"Comparative genomics of trypanosomatid parasitic protozoa."
El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. expand/collapse author list , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N.
Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL EAN77539.1.
[2]"The genome of the African trypanosome Trypanosoma brucei."
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. expand/collapse author list , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 927/4 GUTat10.1 EMBL EAN77539.1.
[3]"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000208 Genomic DNA. Translation: EAN77538.1.
CM000208 Genomic DNA. Translation: EAN77539.1.
RefSeqXP_822366.1. XM_817273.1.
XP_822367.1. XM_817274.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZEYelectron microscopy5.57S1-143[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING5691.Tb10.70.7030.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsEAN77538; EAN77538; Tb10.70.7030.
EAN77539; EAN77539; Tb10.70.7020.
GeneID3662340.
3662341.
KEGGtbr:Tb10.70.7020.
tbr:Tb10.70.7030.

Phylogenomic databases

eggNOGCOG0048.
HOGENOMHOG000040064.
KOK02973.
OMADGAINFI.
ProtClustDBPTZ00067.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012340. NA-bd_OB-fold.
IPR006032. Ribosomal_S12/S23.
IPR005680. Ribosomal_S23_euk/arc.
[Graphical view]
PANTHERPTHR11652. PTHR11652. 1 hit.
PfamPF00164. Ribosom_S12_S23. 1 hit.
[Graphical view]
PIRSFPIRSF002133. Ribosomal_S12/S23. 1 hit.
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00982. S23_S12_E_A. 1 hit.
PROSITEPS00055. RIBOSOMAL_S12. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ38CD1_TRYB2
AccessionPrimary (citable) accession number: Q38CD1
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: March 19, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)