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Q38BK6

- Q38BK6_TRYB2

UniProt

Q38BK6 - Q38BK6_TRYB2

Protein

40S ribosomal protein S3a

Gene

Tb10.70.3360

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotationImported

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S3aUniRule annotation
    Gene namesi
    ORF Names:Tb10.70.3360Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 10

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytosolic small ribosomal subunit Source: UniProtKB-HAMAP

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedUniRule annotation

    Interactioni

    Subunit structurei

    Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (25S, 5.8S and 5S).UniRule annotation

    Protein-protein interaction databases

    STRINGi5691.Tb10.70.3360.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZEYelectron microscopy5.5701-256[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S3Ae family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1890.
    HOGENOMiHOG000105220.
    KOiK02984.
    OMAiTRRRANQ.

    Family and domain databases

    HAMAPiMF_03122. Ribosomal_S3Ae_euk.
    InterProiIPR027500. Ribosomal_S1/3_euk.
    IPR001593. Ribosomal_S3Ae.
    [Graphical view]
    PfamiPF01015. Ribosomal_S3Ae. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q38BK6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTLGKNKRIS KGGKRGKKKA QEAMSRKEWY DVVAPKNFEV RQFAKTICNK    50
    TQGTKIAADF LRGRVYEGNL ADLNKTQNED DAYRKVKFTV QEVQGRNLLT 100
    QFHGMDMTSD RVYYLLRKWC TTIEATVEAK TADGYGLRLF LIAFTKKQEN 150
    QLSKNCYAKT RLVKWVRMRA TNIIRRRLAK LDINDAVSLL TRNILRDRLA 200
    KRCNPIIPLR DLRIRKVKVI RTPKFDAQAL IAAHGEVPTS AEGEARVVEE 250
    AQEETA 256
    Length:256
    Mass (Da):29,422
    Last modified:November 22, 2005 - v1
    Checksum:iF16CDE4800B95B62
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000208 Genomic DNA. Translation: EAN77814.1.
    RefSeqiXP_822642.1. XM_817549.1.

    Genome annotation databases

    EnsemblProtistsiEAN77814; EAN77814; Tb10.70.3360.
    GeneIDi3662991.
    KEGGitbr:Tb10.70.3360.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000208 Genomic DNA. Translation: EAN77814.1 .
    RefSeqi XP_822642.1. XM_817549.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZEY electron microscopy 5.57 0 1-256 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 5691.Tb10.70.3360.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi EAN77814 ; EAN77814 ; Tb10.70.3360 .
    GeneIDi 3662991.
    KEGGi tbr:Tb10.70.3360.

    Phylogenomic databases

    eggNOGi COG1890.
    HOGENOMi HOG000105220.
    KOi K02984.
    OMAi TRRRANQ.

    Family and domain databases

    HAMAPi MF_03122. Ribosomal_S3Ae_euk.
    InterProi IPR027500. Ribosomal_S1/3_euk.
    IPR001593. Ribosomal_S3Ae.
    [Graphical view ]
    Pfami PF01015. Ribosomal_S3Ae. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    2. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ38BK6_TRYB2
    AccessioniPrimary (citable) accession number: Q38BK6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3