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Q38BK6 (Q38BK6_TRYB2) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
40S ribosomal protein S3a HAMAP-Rule MF_03122
Gene names
ORF Names:Tb10.70.3360 EMBL EAN77814.1
OrganismTrypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]
Taxonomic identifier999953 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma

Protein attributes

Sequence length256 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (25S, 5.8S and 5S) By similarity. HAMAP-Rule MF_03122

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_03122.

Sequence similarities

Belongs to the ribosomal protein S3Ae family. HAMAP-Rule MF_03122

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity HAMAP-Rule MF_03122

Sequences

Sequence LengthMass (Da)Tools
Q38BK6 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: F16CDE4800B95B62

FASTA25629,422
        10         20         30         40         50         60 
MTLGKNKRIS KGGKRGKKKA QEAMSRKEWY DVVAPKNFEV RQFAKTICNK TQGTKIAADF 

        70         80         90        100        110        120 
LRGRVYEGNL ADLNKTQNED DAYRKVKFTV QEVQGRNLLT QFHGMDMTSD RVYYLLRKWC 

       130        140        150        160        170        180 
TTIEATVEAK TADGYGLRLF LIAFTKKQEN QLSKNCYAKT RLVKWVRMRA TNIIRRRLAK 

       190        200        210        220        230        240 
LDINDAVSLL TRNILRDRLA KRCNPIIPLR DLRIRKVKVI RTPKFDAQAL IAAHGEVPTS 

       250 
AEGEARVVEE AQEETA 

« Hide

References

« Hide 'large scale' references
[1]"The genome of the African trypanosome Trypanosoma brucei."
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. expand/collapse author list , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 927/4 GUTat10.1 EMBL EAN77814.1.
[2]"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000208 Genomic DNA. Translation: EAN77814.1.
RefSeqXP_822642.1. XM_817549.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZEYelectron microscopy5.5701-256[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING5691.Tb10.70.3360.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsEAN77814; EAN77814; Tb10.70.3360.
GeneID3662991.
KEGGtbr:Tb10.70.3360.

Phylogenomic databases

eggNOGCOG1890.
HOGENOMHOG000105220.
KOK02984.
OMATRRRANQ.

Family and domain databases

HAMAPMF_03122. Ribosomal_S3Ae_euk.
InterProIPR027500. Ribosomal_S1/3_euk.
IPR001593. Ribosomal_S3Ae.
[Graphical view]
PfamPF01015. Ribosomal_S3Ae. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ38BK6_TRYB2
AccessionPrimary (citable) accession number: Q38BK6
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: May 14, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)