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Q38AM9

- Q38AM9_TRYB2

UniProt

Q38AM9 - Q38AM9_TRYB2

Protein

40S ribosomal protein S24

Gene

Tb10.6k15.3340

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (22 Nov 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S24UniRule annotation
    Gene namesi
    ORF Names:Tb10.6k15.3340Imported, Tb10.6k15.3350Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 10

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Interactioni

    Protein-protein interaction databases

    STRINGi5691.Tb10.6k15.3350.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZEYelectron microscopy5.57T1-137[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S24e family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2004.
    HOGENOMiHOG000186306.
    KOiK02974.
    OMAiKTTGFAM.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_00545. Ribosomal_S24e.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001976. Ribosomal_S24e.
    IPR018098. Ribosomal_S24e_CS.
    [Graphical view]
    PANTHERiPTHR10496. PTHR10496. 1 hit.
    PfamiPF01282. Ribosomal_S24e. 1 hit.
    [Graphical view]
    ProDomiPD006052. Ribosomal_S24e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF54189. SSF54189. 1 hit.
    PROSITEiPS00529. RIBOSOMAL_S24E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q38AM9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVFQKKKAEV TVRTSQFKVN KLLNRKQFVV EVNHPGWCGT VPAKLIRNRL    50
    ASLYKVADEN QISVFGFKTK FGGGKTTGFG LIYDDLAAMK RIEPNYRKAR 100
    LGMGKKKLPA RKSVKERRNR NKKIRGKAKG KMQTKKK 137
    Length:137
    Mass (Da):15,684
    Last modified:November 22, 2005 - v1
    Checksum:i0BB9522BDA70F851
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000208 Genomic DNA. Translation: EAN78140.1.
    CM000208 Genomic DNA. Translation: EAN78141.1.
    RefSeqiXP_822968.1. XM_817875.1.
    XP_822969.1. XM_817876.1.

    Genome annotation databases

    EnsemblProtistsiEAN78140; EAN78140; Tb10.6k15.3350.
    EAN78141; EAN78141; Tb10.6k15.3340.
    GeneIDi3662818.
    3662819.
    KEGGitbr:Tb10.6k15.3340.
    tbr:Tb10.6k15.3350.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000208 Genomic DNA. Translation: EAN78140.1 .
    CM000208 Genomic DNA. Translation: EAN78141.1 .
    RefSeqi XP_822968.1. XM_817875.1.
    XP_822969.1. XM_817876.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZEY electron microscopy 5.57 T 1-137 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 5691.Tb10.6k15.3350.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi EAN78140 ; EAN78140 ; Tb10.6k15.3350 .
    EAN78141 ; EAN78141 ; Tb10.6k15.3340 .
    GeneIDi 3662818.
    3662819.
    KEGGi tbr:Tb10.6k15.3340.
    tbr:Tb10.6k15.3350.

    Phylogenomic databases

    eggNOGi COG2004.
    HOGENOMi HOG000186306.
    KOi K02974.
    OMAi KTTGFAM.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_00545. Ribosomal_S24e.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001976. Ribosomal_S24e.
    IPR018098. Ribosomal_S24e_CS.
    [Graphical view ]
    PANTHERi PTHR10496. PTHR10496. 1 hit.
    Pfami PF01282. Ribosomal_S24e. 1 hit.
    [Graphical view ]
    ProDomi PD006052. Ribosomal_S24e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    PROSITEi PS00529. RIBOSOMAL_S24E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    2. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    3. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ38AM9_TRYB2
    AccessioniPrimary (citable) accession number: Q38AM9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 22, 2005
    Last sequence update: November 22, 2005
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3