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Q38AM9 (Q38AM9_TRYB2) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
40S ribosomal protein S24 RuleBase RU004383
Gene names
ORF Names:Tb10.6k15.3340 EMBL EAN78141.1, Tb10.6k15.3350 EMBL EAN78140.1
OrganismTrypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]
Taxonomic identifier999953 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma

Protein attributes

Sequence length137 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S24e family. RuleBase RU004381

Sequences

Sequence LengthMass (Da)Tools
Q38AM9 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 0BB9522BDA70F851

FASTA13715,684
        10         20         30         40         50         60 
MVFQKKKAEV TVRTSQFKVN KLLNRKQFVV EVNHPGWCGT VPAKLIRNRL ASLYKVADEN 

        70         80         90        100        110        120 
QISVFGFKTK FGGGKTTGFG LIYDDLAAMK RIEPNYRKAR LGMGKKKLPA RKSVKERRNR 

       130 
NKKIRGKAKG KMQTKKK 

« Hide

References

« Hide 'large scale' references
[1]"Comparative genomics of trypanosomatid parasitic protozoa."
El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. expand/collapse author list , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N.
Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL EAN78141.1.
[2]"The genome of the African trypanosome Trypanosoma brucei."
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. expand/collapse author list , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 927/4 GUTat10.1 EMBL EAN78141.1.
[3]"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000208 Genomic DNA. Translation: EAN78140.1.
CM000208 Genomic DNA. Translation: EAN78141.1.
RefSeqXP_822968.1. XM_817875.1.
XP_822969.1. XM_817876.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZEYelectron microscopy5.57T1-137[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING5691.Tb10.6k15.3350.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsEAN78140; EAN78140; Tb10.6k15.3350.
EAN78141; EAN78141; Tb10.6k15.3340.
GeneID3662818.
3662819.
KEGGtbr:Tb10.6k15.3340.
tbr:Tb10.6k15.3350.

Phylogenomic databases

eggNOGCOG2004.
HOGENOMHOG000186306.
KOK02974.
OMAKTTGFAM.
ProtClustDBPTZ00071.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_00545. Ribosomal_S24e.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001976. Ribosomal_S24e.
IPR018098. Ribosomal_S24e_CS.
[Graphical view]
PANTHERPTHR10496. PTHR10496. 1 hit.
PfamPF01282. Ribosomal_S24e. 1 hit.
[Graphical view]
ProDomPD006052. Ribosomal_S24e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF54189. SSF54189. 1 hit.
PROSITEPS00529. RIBOSOMAL_S24E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ38AM9_TRYB2
AccessionPrimary (citable) accession number: Q38AM9
Entry history
Integrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: March 19, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)