true
2003-11-28
2024-03-27
157
XTH30_ARATH
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
Theologis A.
Ecker J.R.
Palm C.J.
Federspiel N.A.
Kaul S.
White O.
Alonso J.
Altafi H.
Araujo R.
Bowman C.L.
Brooks S.Y.
Buehler E.
Chan A.
Chao Q.
Chen H.
Cheuk R.F.
Chin C.W.
Chung M.K.
Conn L.
Conway A.B.
Conway A.R.
Creasy T.H.
Dewar K.
Dunn P.
Etgu P.
Feldblyum T.V.
Feng J.-D.
Fong B.
Fujii C.Y.
Gill J.E.
Goldsmith A.D.
Haas B.
Hansen N.F.
Hughes B.
Huizar L.
Hunter J.L.
Jenkins J.
Johnson-Hopson C.
Khan S.
Khaykin E.
Kim C.J.
Koo H.L.
Kremenetskaia I.
Kurtz D.B.
Kwan A.
Lam B.
Langin-Hooper S.
Lee A.
Lee J.M.
Lenz C.A.
Li J.H.
Li Y.-P.
Lin X.
Liu S.X.
Liu Z.A.
Luros J.S.
Maiti R.
Marziali A.
Militscher J.
Miranda M.
Nguyen M.
Nierman W.C.
Osborne B.I.
Pai G.
Peterson J.
Pham P.K.
Rizzo M.
Rooney T.
Rowley D.
Sakano H.
Salzberg S.L.
Schwartz J.R.
Shinn P.
Southwick A.M.
Sun H.
Tallon L.J.
Tambunga G.
Toriumi M.J.
Town C.D.
Utterback T.
Van Aken S.
Vaysberg M.
Vysotskaia V.S.
Walker M.
Wu D.
Yu G.
Fraser C.M.
Venter J.C.
Davis R.W.
doi:10.1038/35048500
2000
Nature
408
816-820
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]
cv. Columbia
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Cheng C.Y.
Krishnakumar V.
Chan A.P.
Thibaud-Nissen F.
Schobel S.
Town C.D.
doi:10.1111/tpj.13415
2017
Plant J.
89
789-804
GENOME REANNOTATION
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Yamada K.
Lim J.
Dale J.M.
Chen H.
Shinn P.
Palm C.J.
Southwick A.M.
Wu H.C.
Kim C.J.
Nguyen M.
Pham P.K.
Cheuk R.F.
Karlin-Newmann G.
Liu S.X.
Lam B.
Sakano H.
Wu T.
Yu G.
Miranda M.
Quach H.L.
Tripp M.
Chang C.H.
Lee J.M.
Toriumi M.J.
Chan M.M.
Tang C.C.
Onodera C.S.
Deng J.M.
Akiyama K.
Ansari Y.
Arakawa T.
Banh J.
Banno F.
Bowser L.
Brooks S.Y.
Carninci P.
Chao Q.
Choy N.
Enju A.
Goldsmith A.D.
Gurjal M.
Hansen N.F.
Hayashizaki Y.
Johnson-Hopson C.
Hsuan V.W.
Iida K.
Karnes M.
Khan S.
Koesema E.
Ishida J.
Jiang P.X.
Jones T.
Kawai J.
Kamiya A.
Meyers C.
Nakajima M.
Narusaka M.
Seki M.
Sakurai T.
Satou M.
Tamse R.
Vaysberg M.
Wallender E.K.
Wong C.
Yamamura Y.
Yuan S.
Shinozaki K.
Davis R.W.
Theologis A.
Ecker J.R.
doi:10.1126/science.1088305
2003
Science
302
842-846
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]
Full-length cDNA from Arabidopsis thaliana.
Brover V.V.
Troukhan M.E.
Alexandrov N.A.
Lu Y.-P.
Flavell R.B.
Feldmann K.A.
2002-03
EMBL/GenBank/DDBJ
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]
The Arabidopsis XET-related gene family: environmental and hormonal regulation of expression.
Xu W.
Campbell P.
Vargheese A.K.
Braam J.
doi:10.1046/j.1365-313x.1996.9060879.x
1996
Plant J.
9
879-889
NUCLEOTIDE SEQUENCE [MRNA] OF 3-343
A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis.
Yokoyama R.
Nishitani K.
doi:10.1093/pcp/pce154
2001
Plant Cell Physiol.
42
1025-1033
TISSUE SPECIFICITY
The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature.
Rose J.K.C.
Braam J.
Fry S.C.
Nishitani K.
doi:10.1093/pcp/pcf171
2002
Plant Cell Physiol.
43
1421-1435
NOMENCLATURE
Glycoside Hydrolase Family 16
1 site, No reported glycans
XTH30
Eukaryota
399
baseline and differential
GH16_XET
Beta-glucanase/XTH
ConA-like_dom_sf
GH16
XET_C
XTH
XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED
XYLOGLUCAN ENDOTRANSGLUCOSYLASE_HYDROLASE PROTEIN 30-RELATED
Glyco_hydro_16
XET_C
XET
Concanavalin A-like lectins/glucanases
GH16_2
AT
Probable xyloglucan endotransglucosylase/hydrolase protein 30
At-XTH30
XTH-30
2.4.1.207
XTH30
XTR4
At1g32170
F3C3.5
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity).
Predominantly expressed in green siliques.
Contains at least one intrachain disulfide bond essential for its enzymatic activity.
In contrast to group 1 and group 2 endotransglucosylase/hydrolase proteins, it may not contain the ligase activity, and may catalyze endohydrolysis xyloglucan polymers only.
Belongs to the glycosyl hydrolase 16 family. XTH group 3 subfamily.
1
23
Probable xyloglucan endotransglucosylase/hydrolase protein 30
37319
24
343
GH16
224
Disordered
306
Nucleophile
109
Proton donor
113
126
128
136
140
203
204
208
285
Important for catalytic activity
111
N-linked (GlcNAc...) asparagine
132
280
293
F
202
2003-11-28
2
true
39888
d7c4a4dd191bc2eac560d153fb005b28
MSKSSYNHIFILILCLCLRSSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQDYSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPECVIVPAEKDRFKETGRLKFGGTEARERRRNRRQQRRPEIEIESDPDDRKLL
true
true
true
true
true
true
true