Q388D3 (Q388D3_TRYB2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
40S ribosomal protein S2, putative EMBL EAN78837.1

Gene names

ORF Names:

Tb10.61.1960 EMBL EAN78837.1, Tb10.61.2070 EMBL EAN78827.1

Organism

Trypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome]

Taxonomic identifier

999953 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Euglenozoa › Kinetoplastida › Trypanosomatidae › Trypanosoma › Trypanozoon › Trypanosoma brucei › Trypanosoma brucei brucei

Protein attributes

Sequence length	266 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S5P family. RuleBase RU003823

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003823 EMBL EAN78837.1
Technical term	3D-structure PDB 3ZEY Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q388D3 [UniParc]. Last modified November 22, 2005. Version 1. Checksum: 54A20ECF9C620998	FASTA	266	28,642
	10 20 30 40 50 60 MADAPRGTGG EQRGFGRGRG GRGGRGGRGG RGGRGGGGDE KEWVPCTKLG RLVKDQKITS 70 80 90 100 110 120 LEEIFLFSMP IKEHQIVDQL IREGDLRDEM MLVFPVQKAT SAGQRTRFKA FNVVGDGNGH 130 140 150 160 170 180 IGVGARVGKE VSLAIRASMI AAKLSIVPVR RGYWGNKIGE PHTIPIKVTG KCGSVAVRLI 190 200 210 220 230 240 PAPRGAGIVA APVPKKILEF AGVEDVYTSS CGKTRTRGNF IMATFYALRK TYGFLTPDLW 250 260 AETEVSRDPT DEHSEFLSMG RKMVAA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Comparative genomics of trypanosomatid parasitic protozoa." El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N. Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: 927/4 GUTat10.1 EMBL EAN78837.1.
[2]	"The genome of the African trypanosome Trypanosoma brucei." Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A. Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 927/4 GUTat10.1 EMBL EAN78837.1.
[3]	"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome." Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J. Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CM000208 Genomic DNA. Translation: EAN78827.1.
CM000208 Genomic DNA. Translation: EAN78837.1.

RefSeq

XP_827939.1. XM_822846.1.
XP_827949.1. XM_822856.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3ZEY	electron microscopy	5.57	P	1-266	[»]

ModBase

Search...

Protein-protein interaction databases

STRING

5691.Tb10.61.2070.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblProtists

EAN78827; EAN78827; Tb10.61.2070.
EAN78837; EAN78837; Tb10.61.1960.

GeneID

3661780.
3663096.

KEGG

tbr:Tb10.61.1960.
tbr:Tb10.61.2070.

Phylogenomic databases

eggNOG

COG0098.

HOGENOM

HOG000072596.

KO

K02981.

OMA

DSKEWIP.

ProtClustDB

PTZ00070.

Family and domain databases

Gene3D

3.30.160.20. 1 hit.
3.30.230.10. 1 hit.

InterPro

IPR014720. dsRNA-bd-like_dom.
IPR000851. Ribosomal_S5.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005711. Ribosomal_S5_euk/arc.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]

PANTHER

PTHR13718. PTHR13718. 1 hit.

Pfam

PF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]

SUPFAM

SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.

TIGRFAMs

TIGR01020. rpsE_arch. 1 hit.

PROSITE

PS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q388D3_TRYB2

Accession

Primary (citable) accession number: Q388D3

Entry history

Integrated into UniProtKB/TrEMBL:	November 22, 2005
Last sequence update:	November 22, 2005
Last modified:	May 1, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)